Variant report

Variant	rs11079562
Chromosome Location	chr17:63286773-63286774
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:63285511..63287118-chr17:63294136..63295696,2	K562	blood:
2	chr17:63284830..63287385-chr17:63556177..63558917,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168646	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1108349	0.85[ASN][1000 genomes]
rs11867807	0.85[EUR][1000 genomes]
rs11871337	0.80[EUR][1000 genomes]
rs12600833	0.95[ASN][1000 genomes]
rs56364026	0.80[ASN][1000 genomes]
rs57733055	0.80[EUR][1000 genomes]
rs57840776	0.89[EUR][1000 genomes]
rs59371945	0.80[EUR][1000 genomes]
rs62063121	0.95[ASN][1000 genomes]
rs62063124	0.95[ASN][1000 genomes]
rs62063125	0.95[ASN][1000 genomes]
rs62063126	0.90[ASN][1000 genomes]
rs62063127	0.90[ASN][1000 genomes]
rs62063130	0.80[ASN][1000 genomes]
rs62063131	0.85[ASN][1000 genomes]
rs7208202	0.95[ASN][1000 genomes]
rs7211594	0.85[EUR][1000 genomes]
rs7225073	0.86[EUR][1000 genomes]
rs724560	0.80[ASN][1000 genomes]
rs72845340	0.80[EUR][1000 genomes]
rs72845363	0.84[EUR][1000 genomes]
rs72845368	0.85[EUR][1000 genomes]
rs72853506	0.88[EUR][1000 genomes]
rs73331813	0.95[ASN][1000 genomes]
rs73334183	0.90[ASN][1000 genomes]
rs73349164	0.95[ASN][1000 genomes]
rs8067471	0.95[ASN][1000 genomes]
rs8067645	0.81[EUR][1000 genomes]
rs8072284	0.85[EUR][1000 genomes]
rs9895320	0.89[EUR][1000 genomes]
rs9896135	0.89[EUR][1000 genomes]
rs9902192	0.95[ASN][1000 genomes]
rs9903141	0.81[EUR][1000 genomes]
rs9903325	0.95[ASN][1000 genomes]
rs9909786	0.86[EUR][1000 genomes]
rs9910848	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63279600-63286800	Weak transcription	Right Atrium	heart
2	chr17:63284400-63286800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr17:63284800-63290200	Weak transcription	Ovary	ovary
4	chr17:63285200-63286800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr17:63285400-63287200	Enhancers	Stomach Mucosa	stomach
6	chr17:63285800-63287200	Enhancers	Fetal Thymus	thymus
7	chr17:63285800-63289400	Weak transcription	Colonic Mucosa	Colon
8	chr17:63286000-63286800	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr17:63286000-63286800	Enhancers	Duodenum Smooth Muscle	Duodenum
10	chr17:63286000-63286800	Active TSS	Rectal Mucosa Donor 29	rectum
11	chr17:63286000-63287000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr17:63286000-63287000	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr17:63286000-63287200	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr17:63286200-63286800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr17:63286200-63286800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr17:63286200-63286800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr17:63286200-63287000	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr17:63286200-63287000	Enhancers	H9 Cell Line	embryonic stem cell
19	chr17:63286400-63286800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr17:63286400-63286800	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr17:63286400-63286800	Flanking Active TSS	Duodenum Mucosa	Duodenum
22	chr17:63286400-63286800	Flanking Active TSS	HUVEC	blood vessel
23	chr17:63286400-63287200	Enhancers	Fetal Intestine Small	intestine
24	chr17:63286600-63286800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
25	chr17:63286600-63286800	Enhancers	Spleen	Spleen
26	chr17:63286600-63287000	Enhancers	H1 Cell Line	embryonic stem cell
27	chr17:63286600-63287000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr17:63286600-63287000	Enhancers	Placenta	Placenta
29	chr17:63286600-63287200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr17:63286600-63287200	Enhancers	Fetal Heart	heart
31	chr17:63286600-63287200	Enhancers	Fetal Intestine Large	intestine
32	chr17:63286600-63287200	Enhancers	Sigmoid Colon	Sigmoid Colon
33	chr17:63286600-63287600	Enhancers	Lung	lung

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