Variant report

Variant	rs12600833
Chromosome Location	chr17:63286871-63286872
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:63285511..63287118-chr17:63294136..63295696,2	K562	blood:
2	chr17:63284830..63287385-chr17:63556177..63558917,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168646	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11079562	0.95[ASN][1000 genomes]
rs1108349	0.81[ASN][1000 genomes]
rs56364026	0.85[ASN][1000 genomes]
rs62063121	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62063124	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62063125	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62063126	0.95[ASN][1000 genomes]
rs62063127	0.95[ASN][1000 genomes]
rs62063130	0.85[ASN][1000 genomes]
rs62063131	0.89[ASN][1000 genomes]
rs7208202	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73331813	1.00[ASN][1000 genomes]
rs73334183	0.95[ASN][1000 genomes]
rs73349164	1.00[ASN][1000 genomes]
rs8067471	1.00[ASN][1000 genomes]
rs9902192	1.00[ASN][1000 genomes]
rs9903325	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63284800-63290200	Weak transcription	Ovary	ovary
2	chr17:63285400-63287200	Enhancers	Stomach Mucosa	stomach
3	chr17:63285800-63287200	Enhancers	Fetal Thymus	thymus
4	chr17:63285800-63289400	Weak transcription	Colonic Mucosa	Colon
5	chr17:63286000-63287000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr17:63286000-63287000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr17:63286000-63287200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr17:63286200-63287000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr17:63286200-63287000	Enhancers	H9 Cell Line	embryonic stem cell
10	chr17:63286400-63287200	Enhancers	Fetal Intestine Small	intestine
11	chr17:63286600-63287000	Enhancers	H1 Cell Line	embryonic stem cell
12	chr17:63286600-63287000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr17:63286600-63287000	Enhancers	Placenta	Placenta
14	chr17:63286600-63287200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr17:63286600-63287200	Enhancers	Fetal Heart	heart
16	chr17:63286600-63287200	Enhancers	Fetal Intestine Large	intestine
17	chr17:63286600-63287200	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr17:63286600-63287600	Enhancers	Lung	lung
19	chr17:63286800-63287000	Enhancers	Duodenum Mucosa	Duodenum
20	chr17:63286800-63287000	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr17:63286800-63287200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr17:63286800-63287200	Enhancers	Right Atrium	heart
23	chr17:63286800-63287200	Flanking Active TSS	Spleen	Spleen
24	chr17:63286800-63287600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr17:63286800-63288600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr17:63286800-63289200	Enhancers	HUVEC	blood vessel
27	chr17:63286800-63290000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr17:63286800-63290000	Enhancers	Rectal Mucosa Donor 29	rectum
29	chr17:63286800-63290200	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr17:63286800-63290200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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