Variant report

Variant	rs62063121
Chromosome Location	chr17:63287589-63287590
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11079562	0.95[ASN][1000 genomes]
rs1108349	0.81[ASN][1000 genomes]
rs12600833	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56364026	0.85[ASN][1000 genomes]
rs62063124	0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62063125	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62063126	0.95[ASN][1000 genomes]
rs62063127	0.95[ASN][1000 genomes]
rs62063130	0.85[ASN][1000 genomes]
rs62063131	0.89[ASN][1000 genomes]
rs7208202	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73331813	1.00[ASN][1000 genomes]
rs73334183	0.95[ASN][1000 genomes]
rs73349164	1.00[ASN][1000 genomes]
rs8067471	1.00[ASN][1000 genomes]
rs9902192	1.00[ASN][1000 genomes]
rs9903325	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63284800-63290200	Weak transcription	Ovary	ovary
2	chr17:63285800-63289400	Weak transcription	Colonic Mucosa	Colon
3	chr17:63286600-63287600	Enhancers	Lung	lung
4	chr17:63286800-63287600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr17:63286800-63288600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr17:63286800-63289200	Enhancers	HUVEC	blood vessel
7	chr17:63286800-63290000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr17:63286800-63290000	Enhancers	Rectal Mucosa Donor 29	rectum
9	chr17:63286800-63290200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr17:63286800-63290200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr17:63287000-63289800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr17:63287000-63289800	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr17:63287000-63289800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr17:63287000-63290000	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr17:63287000-63290600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr17:63287200-63288000	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr17:63287200-63288400	Weak transcription	Stomach Mucosa	stomach
18	chr17:63287200-63289600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr17:63287200-63289800	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr17:63287200-63290200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr17:63287200-63290200	Weak transcription	Fetal Intestine Large	intestine
22	chr17:63287200-63290200	Weak transcription	Fetal Thymus	thymus
23	chr17:63287200-63290600	Weak transcription	Gastric	stomach
24	chr17:63287200-63290600	Weak transcription	Spleen	Spleen
25	chr17:63287200-63294200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr17:63287200-63297400	Weak transcription	Right Atrium	heart
27	chr17:63287400-63290200	Weak transcription	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links