Variant report

No.	Distal block	Cell Line	Cell type
1	chr17:63285511..63287118-chr17:63294136..63295696,2	K562	blood:
2	chr17:63284949..63286460-chr17:63288747..63290967,2	MCF-7	breast:
3	chr17:63284830..63287385-chr17:63556177..63558917,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168646	Chromatin interaction

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11079562	0.95[ASN][1000 genomes]
rs1108349	0.81[ASN][1000 genomes]
rs12600833	1.00[ASN][1000 genomes]
rs2869589	1.00[EUR][1000 genomes]
rs56364026	0.85[ASN][1000 genomes]
rs62063121	1.00[ASN][1000 genomes]
rs62063124	1.00[ASN][1000 genomes]
rs62063125	1.00[ASN][1000 genomes]
rs62063126	0.95[ASN][1000 genomes]
rs62063127	0.95[ASN][1000 genomes]
rs62063130	0.85[ASN][1000 genomes]
rs62063131	0.89[ASN][1000 genomes]
rs7208202	1.00[ASN][1000 genomes]
rs7221293	1.00[EUR][1000 genomes]
rs73331813	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73334183	0.95[ASN][1000 genomes]
rs73349164	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9902192	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9903325	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63279600-63286800	Weak transcription	Right Atrium	heart
2	chr17:63280600-63285800	Weak transcription	HUVEC	blood vessel
3	chr17:63281000-63286200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr17:63283800-63286000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr17:63283800-63286600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr17:63283800-63286600	Weak transcription	Fetal Heart	heart
7	chr17:63284000-63285800	Enhancers	Colonic Mucosa	Colon
8	chr17:63284000-63286600	Weak transcription	Lung	lung
9	chr17:63284000-63286600	Weak transcription	Spleen	Spleen
10	chr17:63284400-63286800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr17:63284800-63286600	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr17:63284800-63290200	Weak transcription	Ovary	ovary
13	chr17:63285000-63286000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr17:63285200-63286800	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr17:63285400-63286000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr17:63285400-63286000	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr17:63285400-63286400	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr17:63285400-63286600	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr17:63285400-63287200	Enhancers	Stomach Mucosa	stomach
20	chr17:63285600-63286000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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