Variant report

Variant	rs62063125
Chromosome Location	chr17:63290432-63290433
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:63284949..63286460-chr17:63288747..63290967,2	MCF-7	breast:
2	chr17:63288514..63291502-chr17:63628041..63630216,2	MCF-7	breast:
3	chr17:63289912..63290924-chr17:63552090..63553613,5	MCF-7	breast:
4	chr17:63289890..63290930-chr17:63452117..63452880,3	MCF-7	breast:
5	chr17:63289929..63290716-chr17:64161400..64162170,3	MCF-7	breast:
6	chr17:63289969..63290949-chr17:63451705..63452445,5	MCF-7	breast:
7	chr17:63290174..63290693-chr17:63308121..63308712,2	MCF-7	breast:
8	chr17:63290099..63290904-chr17:63414701..63415333,3	MCF-7	breast:
9	chr17:63290008..63290664-chr17:63559222..63559801,2	MCF-7	breast:
10	chr17:63274214..63274924-chr17:63290058..63290997,4	MCF-7	breast:
11	chr17:63290259..63290948-chr17:64161433..64162054,3	K562	blood:
12	chr17:63290061..63290785-chr17:63983814..63984831,4	MCF-7	breast:
13	chr17:63289735..63290893-chr17:63552046..63553189,8	MCF-7	breast:
14	chr17:63290039..63290939-chr17:63983872..63984697,8	MCF-7	breast:

No data

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11079562	0.95[ASN][1000 genomes]
rs1108349	0.81[ASN][1000 genomes]
rs12600833	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56364026	0.85[ASN][1000 genomes]
rs62063121	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62063124	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62063126	0.95[ASN][1000 genomes]
rs62063127	0.95[ASN][1000 genomes]
rs62063130	0.85[ASN][1000 genomes]
rs62063131	0.89[ASN][1000 genomes]
rs7208202	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73331813	1.00[ASN][1000 genomes]
rs73334183	0.95[ASN][1000 genomes]
rs73349164	1.00[ASN][1000 genomes]
rs8067471	1.00[ASN][1000 genomes]
rs9902192	1.00[ASN][1000 genomes]
rs9903325	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63287000-63290600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr17:63287200-63290600	Weak transcription	Gastric	stomach
3	chr17:63287200-63290600	Weak transcription	Spleen	Spleen
4	chr17:63287200-63294200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr17:63287200-63297400	Weak transcription	Right Atrium	heart
6	chr17:63289600-63290800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr17:63289600-63291200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
8	chr17:63289800-63290800	Enhancers	H1 Cell Line	embryonic stem cell
9	chr17:63289800-63290800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr17:63289800-63290800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr17:63289800-63291000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr17:63290000-63290800	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr17:63290000-63290800	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr17:63290000-63290800	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr17:63290000-63290800	Enhancers	Brain Anterior Caudate	brain
16	chr17:63290000-63290800	Enhancers	Brain Hippocampus Middle	brain
17	chr17:63290000-63290800	Enhancers	Brain Substantia Nigra	brain
18	chr17:63290000-63290800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
19	chr17:63290000-63291000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr17:63290000-63291000	Enhancers	Colonic Mucosa	Colon
21	chr17:63290000-63291000	Enhancers	Fetal Stomach	stomach
22	chr17:63290200-63290600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
23	chr17:63290200-63290600	Enhancers	Colon Smooth Muscle	Colon
24	chr17:63290200-63290600	Enhancers	Fetal Intestine Large	intestine
25	chr17:63290200-63290600	Enhancers	Rectal Smooth Muscle	rectum
26	chr17:63290200-63290600	Enhancers	A549	lung
27	chr17:63290200-63290800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr17:63290200-63290800	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr17:63290200-63290800	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr17:63290200-63290800	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr17:63290200-63290800	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr17:63290200-63290800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
33	chr17:63290200-63290800	Enhancers	Primary T helper cells PMA-I stimulated	--
34	chr17:63290200-63290800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
35	chr17:63290200-63290800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr17:63290200-63290800	Enhancers	Adipose Nuclei	Adipose
37	chr17:63290200-63290800	Enhancers	Brain Cingulate Gyrus	brain
38	chr17:63290200-63290800	Flanking Active TSS	Brain Germinal Matrix	brain
39	chr17:63290200-63290800	Enhancers	Brain Inferior Temporal Lobe	brain
40	chr17:63290200-63290800	Enhancers	Duodenum Mucosa	Duodenum
41	chr17:63290200-63290800	Enhancers	Fetal Lung	lung
42	chr17:63290200-63290800	Enhancers	Fetal Thymus	thymus
43	chr17:63290200-63290800	Enhancers	Lung	lung
44	chr17:63290200-63290800	Enhancers	Ovary	ovary
45	chr17:63290200-63290800	Enhancers	Pancreas	Pancrea
46	chr17:63290200-63290800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
47	chr17:63290200-63290800	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr17:63290200-63291000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr17:63290200-63291000	Enhancers	iPS-18 Cell Line	embryonic stem cell
50	chr17:63290200-63291000	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links