Variant report

Variant	rs73349164
Chromosome Location	chr17:63282840-63282841
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11079562	0.95[ASN][1000 genomes]
rs1108349	0.81[ASN][1000 genomes]
rs12600833	1.00[ASN][1000 genomes]
rs2869589	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56364026	0.85[ASN][1000 genomes]
rs62063121	1.00[ASN][1000 genomes]
rs62063124	1.00[ASN][1000 genomes]
rs62063125	1.00[ASN][1000 genomes]
rs62063126	0.95[ASN][1000 genomes]
rs62063127	0.95[ASN][1000 genomes]
rs62063130	0.85[ASN][1000 genomes]
rs62063131	0.89[ASN][1000 genomes]
rs7208202	1.00[ASN][1000 genomes]
rs7221293	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73331813	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73334183	0.95[ASN][1000 genomes]
rs8067471	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9902192	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9903325	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63279600-63286800	Weak transcription	Right Atrium	heart
2	chr17:63280400-63283000	Weak transcription	Osteobl	bone
3	chr17:63280600-63284800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr17:63280600-63285400	Weak transcription	Stomach Mucosa	stomach
5	chr17:63280600-63285800	Weak transcription	HUVEC	blood vessel
6	chr17:63281000-63286200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr17:63282600-63283400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr17:63282600-63283600	Enhancers	HSMM	muscle
9	chr17:63282600-63284000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr17:63282600-63284000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr17:63282600-63284000	Enhancers	HSMMtube	muscle
12	chr17:63282600-63284400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr17:63282800-63283000	Bivalent Enhancer	NHLF	lung
14	chr17:63282800-63283200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr17:63282800-63283600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr17:63282800-63283800	Enhancers	Fetal Heart	heart
17	chr17:63282800-63284000	Enhancers	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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