Variant report

Variant	rs62063127
Chromosome Location	chr17:63294442-63294443
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11079562	0.90[ASN][1000 genomes]
rs12600833	0.95[ASN][1000 genomes]
rs62063121	0.95[ASN][1000 genomes]
rs62063124	0.95[ASN][1000 genomes]
rs62063125	0.95[ASN][1000 genomes]
rs62063126	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62063129	0.81[EUR][1000 genomes]
rs62063131	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62063133	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7208202	0.95[ASN][1000 genomes]
rs73331813	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs73334183	0.90[ASN][1000 genomes]
rs73349164	0.95[ASN][1000 genomes]
rs8067471	0.95[ASN][1000 genomes]
rs9902192	0.95[ASN][1000 genomes]
rs9903325	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63287200-63297400	Weak transcription	Right Atrium	heart
2	chr17:63290800-63300200	Weak transcription	Fetal Lung	lung
3	chr17:63290800-63301200	Weak transcription	Pancreas	Pancrea
4	chr17:63293400-63294600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr17:63293400-63295200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr17:63293400-63295400	Enhancers	NHDF-Ad	bronchial
7	chr17:63293600-63295000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr17:63294000-63294600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr17:63294000-63294600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr17:63294200-63295000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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