Variant report

Variant	rs1108349
Chromosome Location	chr17:63298186-63298187
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11079562	0.85[ASN][1000 genomes]
rs12600833	0.81[ASN][1000 genomes]
rs56364026	0.95[ASN][1000 genomes]
rs62063121	0.81[ASN][1000 genomes]
rs62063124	0.81[ASN][1000 genomes]
rs62063125	0.81[ASN][1000 genomes]
rs62063130	0.95[ASN][1000 genomes]
rs62063131	0.90[ASN][1000 genomes]
rs7208202	0.81[ASN][1000 genomes]
rs724560	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72853511	0.82[EUR][1000 genomes]
rs72853513	0.83[EUR][1000 genomes]
rs73331813	0.81[ASN][1000 genomes]
rs73334183	0.85[ASN][1000 genomes]
rs73349164	0.81[ASN][1000 genomes]
rs8067471	0.81[ASN][1000 genomes]
rs9902192	0.81[ASN][1000 genomes]
rs9903325	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1108349	HEATR6	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63290800-63300200	Weak transcription	Fetal Lung	lung
2	chr17:63290800-63301200	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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