Variant report

Variant	rs72853513
Chromosome Location	chr17:63290977-63290978
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:63288514..63291502-chr17:63628041..63630216,2	MCF-7	breast:
2	chr17:63274214..63274924-chr17:63290058..63290997,4	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1108349	0.83[EUR][1000 genomes]
rs724560	0.82[EUR][1000 genomes]
rs72853511	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63287200-63294200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr17:63287200-63297400	Weak transcription	Right Atrium	heart
3	chr17:63289600-63291200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
4	chr17:63289800-63291000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr17:63290000-63291000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr17:63290000-63291000	Enhancers	Colonic Mucosa	Colon
7	chr17:63290000-63291000	Enhancers	Fetal Stomach	stomach
8	chr17:63290200-63291000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr17:63290200-63291000	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr17:63290200-63291000	Enhancers	Fetal Muscle Leg	muscle
11	chr17:63290600-63291000	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr17:63290600-63291000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr17:63290600-63291000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr17:63290800-63291000	Weak transcription	Fetal Thymus	thymus
15	chr17:63290800-63291000	Enhancers	Rectal Mucosa Donor 29	rectum
16	chr17:63290800-63291000	Enhancers	Stomach Mucosa	stomach
17	chr17:63290800-63291000	Bivalent Enhancer	HepG2	liver
18	chr17:63290800-63291200	Enhancers	Brain Germinal Matrix	brain
19	chr17:63290800-63292000	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr17:63290800-63294000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr17:63290800-63300200	Weak transcription	Fetal Lung	lung
22	chr17:63290800-63301200	Weak transcription	Pancreas	Pancrea

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