Variant report

Variant	rs72845340
Chromosome Location	chr17:63267911-63267912
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:63252016..63254731-chr17:63266965..63269419,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11079562	0.80[EUR][1000 genomes]
rs11867807	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11871337	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12150224	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2067622	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28410529	1.00[ASN][1000 genomes]
rs57733055	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57840776	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59371945	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7209620	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7211594	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7225073	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72845343	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72845363	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72845368	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72853506	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72860086	1.00[ASN][1000 genomes]
rs8067645	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8072284	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9895320	0.90[EUR][1000 genomes]
rs9896135	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9903141	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9909786	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9910848	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9911786	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63266800-63268000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr17:63267400-63273400	Weak transcription	Fetal Thymus	thymus
3	chr17:63267400-63274600	Weak transcription	Fetal Brain Female	brain
4	chr17:63267800-63268000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr17:63267800-63271000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr17:63267800-63273000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr17:63267800-63273200	Weak transcription	Fetal Stomach	stomach
8	chr17:63267800-63273600	Weak transcription	Placenta	Placenta
9	chr17:63267800-63273800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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