Variant report

Variant	rs72845368
Chromosome Location	chr17:63281788-63281789
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11079562	0.85[EUR][1000 genomes]
rs11867807	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11871337	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12150224	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2067622	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28410529	1.00[ASN][1000 genomes]
rs57733055	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57840776	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59371945	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7209620	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7211594	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7225073	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72845340	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72845343	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72845363	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72853506	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72860086	1.00[ASN][1000 genomes]
rs8067645	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8072284	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9895320	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9896135	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9903141	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9909786	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9910848	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9911786	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63274600-63282800	Weak transcription	NH-A	brain
2	chr17:63279600-63286800	Weak transcription	Right Atrium	heart
3	chr17:63280400-63282600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr17:63280400-63283000	Weak transcription	Osteobl	bone
5	chr17:63280600-63284800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr17:63280600-63285400	Weak transcription	Stomach Mucosa	stomach
7	chr17:63280600-63285800	Weak transcription	HUVEC	blood vessel
8	chr17:63281000-63286200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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