Variant report

Variant	rs57733055
Chromosome Location	chr17:63274969-63274970
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:63274496..63275079-chr17:64161642..64162322,2	MCF-7	breast:
2	chr17:63274102..63275070-chr17:63552570..63553437,5	MCF-7	breast:
3	chr17:63274211..63275004-chr17:63983668..63984434,5	MCF-7	breast:
4	chr17:63227506..63228525-chr17:63274227..63275044,6	MCF-7	breast:
5	chr17:63274350..63275077-chr17:63552188..63553540,5	MCF-7	breast:
6	chr17:63274077..63275163-chr17:63983745..63984867,8	MCF-7	breast:
7	chr17:63274573..63275230-chr17:63790259..63791479,3	MCF-7	breast:
8	chr17:63274176..63275076-chr17:64161674..64162346,3	MCF-7	breast:
9	chr17:63274393..63275045-chr17:64621458..64621982,2	MCF-7	breast:
10	chr17:63274317..63276414-chr17:63276613..63279596,3	MCF-7	breast:

No data

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11079562	0.80[EUR][1000 genomes]
rs11867807	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11871337	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12150224	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2067622	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28410529	1.00[ASN][1000 genomes]
rs57840776	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59371945	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7209620	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7211594	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7225073	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72845340	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72845343	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72845363	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72845368	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72853506	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72860086	1.00[ASN][1000 genomes]
rs8067645	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8072284	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9895320	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9896135	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9903141	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9909786	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9910848	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9911786	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63273000-63275200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr17:63273000-63276000	Enhancers	Fetal Brain Male	brain
3	chr17:63273200-63275000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr17:63273400-63275000	Enhancers	Fetal Heart	heart
5	chr17:63273400-63275000	Enhancers	Fetal Thymus	thymus
6	chr17:63273400-63275200	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr17:63273400-63275200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr17:63273600-63275000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr17:63273600-63275000	Enhancers	Fetal Lung	lung
10	chr17:63273600-63275200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr17:63273600-63275200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr17:63273800-63275000	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr17:63274000-63279400	Weak transcription	Right Atrium	heart
14	chr17:63274000-63279800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr17:63274200-63275000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr17:63274200-63275000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr17:63274400-63275000	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr17:63274400-63275000	Enhancers	Stomach Mucosa	stomach
19	chr17:63274400-63275000	Enhancers	HSMMtube	muscle
20	chr17:63274400-63275200	Bivalent Enhancer	Fetal Stomach	stomach
21	chr17:63274600-63275000	Enhancers	Brain Hippocampus Middle	brain
22	chr17:63274600-63275000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
23	chr17:63274600-63275000	Enhancers	Stomach Smooth Muscle	stomach
24	chr17:63274600-63275200	Enhancers	Fetal Brain Female	brain
25	chr17:63274600-63275200	Enhancers	Right Ventricle	heart
26	chr17:63274600-63282800	Weak transcription	NH-A	brain
27	chr17:63274800-63275000	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr17:63274800-63275000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
29	chr17:63274800-63275000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr17:63274800-63275000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
31	chr17:63274800-63275200	Enhancers	H1 Cell Line	embryonic stem cell
32	chr17:63274800-63275200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr17:63274800-63275200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr17:63274800-63275200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr17:63274800-63275200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
36	chr17:63274800-63275200	Bivalent Enhancer	HepG2	liver
37	chr17:63274800-63279800	Weak transcription	Muscle Satellite Cultured Cells	--

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