Variant report

Variant	rs72853506
Chromosome Location	chr17:63287167-63287168
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:63284830..63287385-chr17:63556177..63558917,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168646	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11079562	0.88[EUR][1000 genomes]
rs11867807	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11871337	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12150224	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2067622	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28410529	1.00[ASN][1000 genomes]
rs57733055	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57840776	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59371945	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7209620	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7211594	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7225073	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72845340	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72845343	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72845363	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72845368	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72860086	1.00[ASN][1000 genomes]
rs8067645	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8072284	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9895320	0.99[EUR][1000 genomes]
rs9896135	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9903141	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9909786	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9910848	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9911786	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63284800-63290200	Weak transcription	Ovary	ovary
2	chr17:63285400-63287200	Enhancers	Stomach Mucosa	stomach
3	chr17:63285800-63287200	Enhancers	Fetal Thymus	thymus
4	chr17:63285800-63289400	Weak transcription	Colonic Mucosa	Colon
5	chr17:63286000-63287200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr17:63286400-63287200	Enhancers	Fetal Intestine Small	intestine
7	chr17:63286600-63287200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr17:63286600-63287200	Enhancers	Fetal Heart	heart
9	chr17:63286600-63287200	Enhancers	Fetal Intestine Large	intestine
10	chr17:63286600-63287200	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr17:63286600-63287600	Enhancers	Lung	lung
12	chr17:63286800-63287200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr17:63286800-63287200	Enhancers	Right Atrium	heart
14	chr17:63286800-63287200	Flanking Active TSS	Spleen	Spleen
15	chr17:63286800-63287600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr17:63286800-63288600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr17:63286800-63289200	Enhancers	HUVEC	blood vessel
18	chr17:63286800-63290000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr17:63286800-63290000	Enhancers	Rectal Mucosa Donor 29	rectum
20	chr17:63286800-63290200	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr17:63286800-63290200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr17:63287000-63287200	Flanking Active TSS	Duodenum Mucosa	Duodenum
23	chr17:63287000-63287200	Enhancers	Gastric	stomach
24	chr17:63287000-63287200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
25	chr17:63287000-63289800	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr17:63287000-63289800	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr17:63287000-63289800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr17:63287000-63290000	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr17:63287000-63290600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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