Variant report

Variant	rs2067622
Chromosome Location	chr17:63279721-63279722
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11867807	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11871337	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12150224	1.00[ASN][1000 genomes]
rs28410529	1.00[ASN][1000 genomes]
rs57733055	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57840776	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59371945	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7209620	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7211594	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7225073	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72845340	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72845343	0.82[EUR][1000 genomes]
rs72845363	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72845368	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72853506	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72860086	1.00[ASN][1000 genomes]
rs8067645	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8072284	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9895320	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9896135	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9903141	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9909786	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9910848	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9911786	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63274000-63279800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr17:63274600-63282800	Weak transcription	NH-A	brain
3	chr17:63274800-63279800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr17:63279200-63280600	Enhancers	Stomach Mucosa	stomach
5	chr17:63279400-63280600	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr17:63279400-63280600	Enhancers	HUVEC	blood vessel
7	chr17:63279400-63280800	Enhancers	Rectal Mucosa Donor 29	rectum
8	chr17:63279600-63286800	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links