Variant report

Variant	rs9900709
Chromosome Location	chr17:63208206-63208207
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:63204633..63206488-chr17:63207095..63209567,2	K562	blood:
2	chr17:63203039..63206876-chr17:63207747..63211148,3	MCF-7	breast:

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10514867	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];1.00[ASN][1000 genomes]
rs11650746	1.00[ASN][1000 genomes]
rs11651062	1.00[ASN][1000 genomes]
rs11651081	0.94[ASN][1000 genomes]
rs11654243	0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11654391	0.88[ASN][1000 genomes]
rs11657250	1.00[ASN][1000 genomes]
rs11658655	1.00[ASN][1000 genomes]
rs11658673	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11658736	0.94[ASN][1000 genomes]
rs11658773	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1514500	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16960903	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs16960905	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs16960920	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs16960957	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs16961015	1.00[CHB][hapmap]
rs16961273	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];1.00[ASN][1000 genomes]
rs17688887	1.00[CEU][hapmap]
rs28451574	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28525077	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28542898	0.83[EUR][1000 genomes]
rs2869578	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2869579	1.00[CEU][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2869580	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2869581	0.99[EUR][1000 genomes]
rs2869582	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2869584	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4293415	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4588019	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4790954	1.00[CEU][hapmap]
rs4791223	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4791227	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs55686226	0.99[EUR][1000 genomes]
rs55847515	0.80[ASN][1000 genomes]
rs55904132	0.85[EUR][1000 genomes]
rs55948632	0.87[ASN][1000 genomes]
rs55948933	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56102951	0.94[ASN][1000 genomes]
rs59173947	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61534937	0.80[ASN][1000 genomes]
rs61708414	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62065135	0.87[EUR][1000 genomes]
rs7211341	0.94[ASN][1000 genomes]
rs7211964	0.83[EUR][1000 genomes]
rs7215502	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7217524	1.00[JPT][hapmap]
rs7217548	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7218518	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7220710	1.00[ASN][1000 genomes]
rs7220751	0.92[CEU][hapmap]
rs7220949	1.00[ASN][1000 genomes]
rs7221103	1.00[ASN][1000 genomes]
rs73330407	0.93[ASN][1000 genomes]
rs73330465	0.85[EUR][1000 genomes]
rs73347632	0.94[ASN][1000 genomes]
rs73994748	0.82[EUR][1000 genomes]
rs73994757	0.80[ASN][1000 genomes]
rs73994758	0.80[ASN][1000 genomes]
rs73994761	0.80[ASN][1000 genomes]
rs73994763	0.80[ASN][1000 genomes]
rs73994764	0.80[ASN][1000 genomes]
rs73994765	0.80[ASN][1000 genomes]
rs73994766	0.80[ASN][1000 genomes]
rs8065438	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs8065444	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs8066063	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs8066072	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs8068016	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs8071603	0.88[ASN][1000 genomes]
rs8072543	0.94[ASN][1000 genomes]
rs8072603	1.00[CEU][hapmap]
rs8072633	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs8080929	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs908089	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs925674	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.94[ASN][1000 genomes]
rs9889653	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs9898825	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs9900568	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9901108	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs9904207	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9904540	0.86[CEU][hapmap]
rs9907146	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9907374	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9908359	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs9909394	0.81[CEU][hapmap]
rs9914418	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9914790	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9916092	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9916373	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs9916789	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63176400-63223800	Weak transcription	Lung	lung
2	chr17:63181800-63209600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr17:63193800-63209800	Weak transcription	Dnd41	blood
4	chr17:63195000-63212400	Weak transcription	Pancreas	Pancrea
5	chr17:63195200-63209000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr17:63199000-63217200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr17:63199200-63211800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr17:63201200-63209600	Weak transcription	Gastric	stomach
9	chr17:63204000-63208600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr17:63205400-63209200	Weak transcription	Brain Hippocampus Middle	brain
11	chr17:63205800-63209000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr17:63205800-63215000	Weak transcription	Brain Substantia Nigra	brain
13	chr17:63207800-63209200	Strong transcription	Brain Anterior Caudate	brain
14	chr17:63208000-63212000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr17:63208200-63211000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links