Variant report

Variant	rs8071603
Chromosome Location	chr17:63182357-63182358
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZC3H11A	chr17:63182188-63182438	K562	blood:	n/a	n/a

Variant related genes	Relation type
RGS9	TF binding region
ENSG00000265883	TF binding region

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10514867	0.88[ASN][1000 genomes]
rs11650746	0.88[ASN][1000 genomes]
rs11651062	0.88[ASN][1000 genomes]
rs11651081	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11654243	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11654391	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11657250	0.88[ASN][1000 genomes]
rs11658655	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11658673	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11658736	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11658773	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16960903	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16960905	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16960920	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16960957	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16961273	0.88[ASN][1000 genomes]
rs2869578	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2869579	0.88[ASN][1000 genomes]
rs2869580	0.88[ASN][1000 genomes]
rs2869582	0.88[ASN][1000 genomes]
rs2869584	0.88[ASN][1000 genomes]
rs4293415	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4588019	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4791223	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4791227	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4791228	0.80[EUR][1000 genomes]
rs55948933	0.88[ASN][1000 genomes]
rs56102951	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7207726	0.83[EUR][1000 genomes]
rs7211341	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7215502	0.88[ASN][1000 genomes]
rs7220710	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7220949	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7221103	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73330407	0.82[ASN][1000 genomes]
rs73347632	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8065725	0.87[EUR][1000 genomes]
rs8072543	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8072633	0.88[ASN][1000 genomes]
rs8080929	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs908089	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs925674	0.82[ASN][1000 genomes]
rs9889653	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9900568	0.88[ASN][1000 genomes]
rs9900709	0.88[ASN][1000 genomes]
rs9907146	0.88[ASN][1000 genomes]
rs9907374	0.82[ASN][1000 genomes]
rs9908359	0.82[ASN][1000 genomes]
rs9914418	0.88[ASN][1000 genomes]
rs9914790	0.88[ASN][1000 genomes]
rs9916092	0.88[ASN][1000 genomes]
rs9916789	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63169800-63190800	Weak transcription	Gastric	stomach
2	chr17:63176400-63223800	Weak transcription	Lung	lung
3	chr17:63179000-63183000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr17:63179400-63182600	Enhancers	H1 Cell Line	embryonic stem cell
5	chr17:63179600-63183000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr17:63180000-63194600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr17:63180600-63186800	Weak transcription	Colon Smooth Muscle	Colon
8	chr17:63180600-63194800	Weak transcription	Brain Hippocampus Middle	brain
9	chr17:63180800-63186600	Weak transcription	Brain Anterior Caudate	brain
10	chr17:63181200-63187400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr17:63181200-63192800	Weak transcription	Dnd41	blood
12	chr17:63181200-63197400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr17:63181400-63184400	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr17:63181600-63183000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr17:63181600-63186800	Weak transcription	HSMMtube	muscle
16	chr17:63181600-63189400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr17:63181800-63209600	Weak transcription	Rectal Smooth Muscle	rectum
18	chr17:63182000-63182600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr17:63182000-63182800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr17:63182000-63186800	Weak transcription	A549	lung
21	chr17:63182200-63187400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr17:63182200-63187800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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