Variant report

Variant	rs9908359
Chromosome Location	chr17:63171805-63171806
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:63169981..63172249-chr17:63179988..63182257,2	K562	blood:
2	chr17:63167995..63174174-chr17:63174484..63177820,5	MCF-7	breast:
3	chr17:63149027..63151275-chr17:63171482..63172994,2	K562	blood:
4	chr17:63170124..63172444-chr17:63186686..63188784,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000265883	Chromatin interaction

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10514867	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs10514868	1.00[CEU][hapmap]
rs11650746	0.80[ASN][1000 genomes]
rs11651062	0.80[ASN][1000 genomes]
rs11651081	0.87[ASN][1000 genomes]
rs11654243	0.82[CHB][hapmap];0.87[ASN][1000 genomes]
rs11654391	0.82[ASN][1000 genomes]
rs11657250	0.80[ASN][1000 genomes]
rs11658655	0.80[ASN][1000 genomes]
rs11658673	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs11658736	0.87[ASN][1000 genomes]
rs11658773	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs1514500	1.00[CHB][hapmap]
rs16960881	1.00[CEU][hapmap]
rs16960903	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs16960905	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs16960920	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs16960933	1.00[CEU][hapmap]
rs16960957	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs16961015	1.00[CHB][hapmap]
rs16961081	1.00[CEU][hapmap]
rs16961273	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs2869578	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2869579	0.80[ASN][1000 genomes]
rs2869580	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs2869582	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs2869584	0.80[ASN][1000 genomes]
rs4293415	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs4588019	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs4791223	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs4791227	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs55948933	0.80[ASN][1000 genomes]
rs56102951	0.87[ASN][1000 genomes]
rs7211341	0.87[ASN][1000 genomes]
rs7215502	0.80[ASN][1000 genomes]
rs7217548	1.00[CHB][hapmap]
rs7218518	1.00[CHB][hapmap]
rs7220359	1.00[CEU][hapmap]
rs7220710	0.80[ASN][1000 genomes]
rs7220949	0.80[ASN][1000 genomes]
rs7221103	0.80[ASN][1000 genomes]
rs73330407	0.86[ASN][1000 genomes]
rs73347632	0.87[ASN][1000 genomes]
rs73994741	0.86[EUR][1000 genomes]
rs8065438	1.00[CHB][hapmap]
rs8065444	1.00[CHB][hapmap]
rs8066063	1.00[CHB][hapmap]
rs8066072	1.00[CHB][hapmap]
rs8068016	1.00[CHB][hapmap]
rs8071603	0.82[ASN][1000 genomes]
rs8072543	0.87[ASN][1000 genomes]
rs8072633	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs8080929	1.00[CHB][hapmap]
rs884973	1.00[CEU][hapmap]
rs908089	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs925674	1.00[CHB][hapmap]
rs9889653	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs9898825	1.00[CHB][hapmap]
rs9900568	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs9900709	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs9901108	1.00[CHB][hapmap]
rs9904207	1.00[CHB][hapmap]
rs9907146	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs9907374	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs9914418	0.80[ASN][1000 genomes]
rs9914790	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs9916092	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs9916789	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv3341476	chr17:63168490-63172688	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63141000-63175200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr17:63153600-63175400	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr17:63157000-63179800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr17:63160000-63180400	Weak transcription	Brain Substantia Nigra	brain
5	chr17:63167000-63172600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr17:63167400-63175200	Weak transcription	Brain Germinal Matrix	brain
7	chr17:63167600-63172800	Enhancers	Primary T cells fromperipheralblood	blood
8	chr17:63167600-63175000	Weak transcription	Brain Angular Gyrus	brain
9	chr17:63167800-63172800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr17:63167800-63175000	Weak transcription	Fetal Brain Female	brain
11	chr17:63169000-63172000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr17:63169800-63190800	Weak transcription	Gastric	stomach
13	chr17:63170000-63173600	Weak transcription	HUVEC	blood vessel
14	chr17:63170000-63173800	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr17:63170000-63175000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr17:63170000-63175200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr17:63170000-63177600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr17:63170000-63178400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr17:63170000-63180200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr17:63170200-63172800	Weak transcription	Stomach Smooth Muscle	stomach
21	chr17:63170200-63173800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr17:63170200-63174200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr17:63170200-63174600	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr17:63170200-63175000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr17:63170200-63175200	Weak transcription	Fetal Stomach	stomach
26	chr17:63170200-63175600	Enhancers	GM12878-XiMat	blood
27	chr17:63170400-63172400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
28	chr17:63170400-63175200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr17:63170600-63172000	Weak transcription	Primary B cells from peripheral blood	blood
30	chr17:63170600-63172000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
31	chr17:63170600-63173800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr17:63170600-63175200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr17:63170600-63175200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr17:63170600-63175200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr17:63170600-63177600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr17:63170800-63175000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr17:63170800-63175000	Weak transcription	Brain Anterior Caudate	brain
38	chr17:63170800-63175200	Weak transcription	Thymus	Thymus
39	chr17:63170800-63175600	Weak transcription	Primary T cells from cord blood	blood
40	chr17:63170800-63177400	Weak transcription	Primary hematopoietic stem cells	blood
41	chr17:63171000-63172400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr17:63171000-63175600	Weak transcription	Fetal Kidney	kidney
43	chr17:63171200-63175200	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr17:63171400-63172200	Enhancers	Fetal Thymus	thymus
45	chr17:63171400-63173000	Weak transcription	Dnd41	blood
46	chr17:63171400-63175000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr17:63171400-63175000	Weak transcription	Fetal Brain Male	brain
48	chr17:63171400-63175200	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr17:63171600-63175000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr17:63171600-63175800	Weak transcription	Spleen	Spleen

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