Variant report

Variant	rs16960881
Chromosome Location	chr17:63179118-63179119
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:63178028..63180075-chr17:63181062..63183673,2	K562	blood:
2	chr17:63117639..63119496-chr17:63177929..63179773,2	MCF-7	breast:
3	chr17:63173795..63175589-chr17:63177989..63180729,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000265883	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10514868	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12325710	1.00[ASN][1000 genomes]
rs12450635	1.00[ASN][1000 genomes]
rs12450829	1.00[ASN][1000 genomes]
rs12451981	1.00[ASN][1000 genomes]
rs12452228	1.00[ASN][1000 genomes]
rs12452865	1.00[ASN][1000 genomes]
rs12453218	1.00[ASN][1000 genomes]
rs1399292	1.00[ASN][1000 genomes]
rs1399293	1.00[ASN][1000 genomes]
rs16960740	1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs16960933	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16960958	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16961081	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16961956	1.00[ASN][1000 genomes]
rs17689830	1.00[ASN][1000 genomes]
rs17689972	1.00[ASN][1000 genomes]
rs17690009	1.00[ASN][1000 genomes]
rs17690085	1.00[ASN][1000 genomes]
rs17746268	1.00[ASN][1000 genomes]
rs17746729	1.00[ASN][1000 genomes]
rs17746759	1.00[ASN][1000 genomes]
rs17763241	1.00[ASN][1000 genomes]
rs17763899	1.00[ASN][1000 genomes]
rs41390346	1.00[ASN][1000 genomes]
rs55809615	1.00[ASN][1000 genomes]
rs56058698	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56288597	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56363901	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56823394	1.00[ASN][1000 genomes]
rs61339087	1.00[ASN][1000 genomes]
rs61424330	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7215849	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7219811	1.00[ASN][1000 genomes]
rs7220359	1.00[CEU][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7220496	1.00[ASN][1000 genomes]
rs7224836	1.00[ASN][1000 genomes]
rs73330418	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73994741	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73994779	1.00[ASN][1000 genomes]
rs8077158	1.00[ASN][1000 genomes]
rs8077595	1.00[ASN][1000 genomes]
rs884973	1.00[CEU][hapmap]
rs9889638	1.00[ASN][1000 genomes]
rs9908359	1.00[CEU][hapmap]
rs9915344	1.00[ASN][1000 genomes]
rs9915678	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63157000-63179800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr17:63160000-63180400	Weak transcription	Brain Substantia Nigra	brain
3	chr17:63169800-63190800	Weak transcription	Gastric	stomach
4	chr17:63170000-63180200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr17:63173000-63179800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr17:63173400-63179800	Weak transcription	Aorta	Aorta
7	chr17:63173600-63180000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr17:63174400-63179800	Weak transcription	NH-A	brain
9	chr17:63174400-63180000	Weak transcription	Osteobl	bone
10	chr17:63175000-63179200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr17:63175000-63179200	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr17:63175000-63179400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr17:63175400-63179600	Weak transcription	Stomach Smooth Muscle	stomach
14	chr17:63175400-63179800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr17:63175400-63179800	Weak transcription	Brain Hippocampus Middle	brain
16	chr17:63176000-63179600	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr17:63176000-63180000	Weak transcription	NHLF	lung
18	chr17:63176000-63181000	Weak transcription	Fetal Kidney	kidney
19	chr17:63176200-63179600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr17:63176200-63179600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr17:63176200-63179800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr17:63176200-63179800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr17:63176200-63180400	Weak transcription	Brain Angular Gyrus	brain
24	chr17:63176200-63180400	Weak transcription	Brain Cingulate Gyrus	brain
25	chr17:63176400-63179200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr17:63176400-63179600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr17:63176400-63179600	Weak transcription	Fetal Brain Male	brain
28	chr17:63176400-63179800	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr17:63176400-63179800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr17:63176400-63179800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr17:63176400-63179800	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr17:63176400-63180000	Weak transcription	Brain Anterior Caudate	brain
33	chr17:63176400-63223800	Weak transcription	Lung	lung
34	chr17:63176600-63179600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr17:63176600-63180600	Enhancers	Primary T cells fromperipheralblood	blood
36	chr17:63176800-63179200	Enhancers	Dnd41	blood
37	chr17:63177400-63179200	Enhancers	Primary hematopoietic stem cells	blood
38	chr17:63177600-63179200	Enhancers	Colonic Mucosa	Colon
39	chr17:63177600-63179800	Enhancers	Spleen	Spleen
40	chr17:63178000-63181600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr17:63178200-63179800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr17:63178400-63179800	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr17:63178400-63179800	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr17:63178400-63180600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr17:63178400-63181200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr17:63178400-63181200	Enhancers	HUVEC	blood vessel
47	chr17:63178600-63179400	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr17:63178800-63179200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr17:63178800-63179400	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr17:63178800-63179800	Enhancers	GM12878-XiMat	blood

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