Variant report
| Variant | rs9915678 |
|---|---|
| Chromosome Location | chr17:63254193-63254194 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr17:63252016..63254731-chr17:63266965..63269419,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:46)
| rs_ID | r2[population] |
|---|---|
| rs10514868 | 1.00[ASN][1000 genomes] |
| rs12325710 | 1.00[ASN][1000 genomes] |
| rs12450635 | 1.00[ASN][1000 genomes] |
| rs12450829 | 1.00[ASN][1000 genomes] |
| rs12451981 | 1.00[ASN][1000 genomes] |
| rs12452228 | 1.00[ASN][1000 genomes] |
| rs12452865 | 1.00[ASN][1000 genomes] |
| rs12453218 | 1.00[ASN][1000 genomes] |
| rs1399292 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1399293 | 0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16960740 | 1.00[ASN][1000 genomes] |
| rs16960881 | 1.00[ASN][1000 genomes] |
| rs16960933 | 1.00[ASN][1000 genomes] |
| rs16960958 | 1.00[ASN][1000 genomes] |
| rs16961081 | 1.00[ASN][1000 genomes] |
| rs16961956 | 1.00[ASN][1000 genomes] |
| rs17689830 | 1.00[ASN][1000 genomes] |
| rs17689972 | 1.00[ASN][1000 genomes] |
| rs17690009 | 1.00[ASN][1000 genomes] |
| rs17690085 | 1.00[ASN][1000 genomes] |
| rs17746268 | 1.00[ASN][1000 genomes] |
| rs17746729 | 1.00[ASN][1000 genomes] |
| rs17746759 | 1.00[ASN][1000 genomes] |
| rs17746801 | 1.00[ASN][1000 genomes] |
| rs17763241 | 1.00[ASN][1000 genomes] |
| rs17763899 | 1.00[ASN][1000 genomes] |
| rs41390346 | 1.00[ASN][1000 genomes] |
| rs55809615 | 1.00[ASN][1000 genomes] |
| rs56058698 | 1.00[ASN][1000 genomes] |
| rs56288597 | 1.00[ASN][1000 genomes] |
| rs56363901 | 1.00[ASN][1000 genomes] |
| rs56823394 | 1.00[ASN][1000 genomes] |
| rs61339087 | 1.00[ASN][1000 genomes] |
| rs61424330 | 1.00[ASN][1000 genomes] |
| rs7215849 | 1.00[ASN][1000 genomes] |
| rs7219811 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7220359 | 1.00[ASN][1000 genomes] |
| rs7220496 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7224836 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73330418 | 1.00[ASN][1000 genomes] |
| rs73994741 | 1.00[ASN][1000 genomes] |
| rs73994779 | 1.00[ASN][1000 genomes] |
| rs8077158 | 1.00[ASN][1000 genomes] |
| rs8077595 | 1.00[ASN][1000 genomes] |
| rs9889638 | 1.00[ASN][1000 genomes] |
| rs9915344 | 0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530764 | chr17:62939944-63278472 | Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 56 gene(s) | inside rSNPs | diseases |
| 2 | nsv482610 | chr17:63214370-63372334 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs9915678 | PECAM1 | cis | lymphoblastoid | seeQTL |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr17:63253600-63260200 | Weak transcription | Pancreas | Pancrea |
