The 2.0 version of rSNPBase

Variant report

Variant rs56058698
Chromosome Location chr17:63179433-63179434
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:55 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:63157000-63179800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr17:63160000-63180400 Weak transcription Brain Substantia Nigra brain
3 chr17:63169800-63190800 Weak transcription Gastric stomach
4 chr17:63170000-63180200 Weak transcription ES-WA7 Cell Line embryonic stem cell
5 chr17:63173000-63179800 Weak transcription Breast Myoepithelial Primary Cells Breast
6 chr17:63173400-63179800 Weak transcription Aorta Aorta
7 chr17:63173600-63180000 Enhancers Primary Natural Killer cells fromperipheralblood blood
8 chr17:63174400-63179800 Weak transcription NH-A brain
9 chr17:63174400-63180000 Weak transcription Osteobl bone
10 chr17:63175400-63179600 Weak transcription Stomach Smooth Muscle stomach
11 chr17:63175400-63179800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
12 chr17:63175400-63179800 Weak transcription Brain Hippocampus Middle brain
13 chr17:63176000-63179600 Weak transcription Muscle Satellite Cultured Cells --
14 chr17:63176000-63180000 Weak transcription NHLF lung
15 chr17:63176000-63181000 Weak transcription Fetal Kidney kidney
16 chr17:63176200-63179600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
17 chr17:63176200-63179600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
18 chr17:63176200-63179800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
19 chr17:63176200-63179800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
20 chr17:63176200-63180400 Weak transcription Brain Angular Gyrus brain
21 chr17:63176200-63180400 Weak transcription Brain Cingulate Gyrus brain
22 chr17:63176400-63179600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
23 chr17:63176400-63179600 Weak transcription Fetal Brain Male brain
24 chr17:63176400-63179800 Weak transcription Cortex derived primary cultured neurospheres brain
25 chr17:63176400-63179800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
26 chr17:63176400-63179800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
27 chr17:63176400-63179800 Weak transcription Brain Inferior Temporal Lobe brain
28 chr17:63176400-63180000 Weak transcription Brain Anterior Caudate brain
29 chr17:63176400-63223800 Weak transcription Lung lung
30 chr17:63176600-63179600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
31 chr17:63176600-63180600 Enhancers Primary T cells fromperipheralblood blood
32 chr17:63177600-63179800 Enhancers Spleen Spleen
33 chr17:63178000-63181600 Enhancers Fetal Adrenal Gland Adrenal Gland
34 chr17:63178200-63179800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
35 chr17:63178400-63179800 Enhancers ES-I3 Cell Line embryonic stem cell
36 chr17:63178400-63179800 Enhancers HUES6 Cell Line embryonic stem cell
37 chr17:63178400-63180600 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
38 chr17:63178400-63181200 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
39 chr17:63178400-63181200 Enhancers HUVEC blood vessel
40 chr17:63178800-63179800 Enhancers GM12878-XiMat blood
41 chr17:63178800-63181400 Weak transcription K562 blood
42 chr17:63178800-63182000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
43 chr17:63178800-63182200 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
44 chr17:63179000-63179600 Weak transcription Placenta Placenta
45 chr17:63179000-63179800 Enhancers iPS-20b Cell Line embryonic stem cell
46 chr17:63179000-63179800 Weak transcription Rectal Smooth Muscle rectum
47 chr17:63179000-63180800 Weak transcription Primary T regulatory cells fromperipheralblood blood
48 chr17:63179000-63181000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
49 chr17:63179000-63183000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
50 chr17:63179200-63179800 Weak transcription Colonic Mucosa Colon

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Last update: Aug 31, 2015