Variant report

Variant	rs10514868
Chromosome Location	chr17:63184349-63184350
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CBX3	chr17:63184100-63184412	K562	blood:	n/a	n/a

Variant related genes	Relation type
RGS9	TF binding region
ENSG00000265883	TF binding region

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs12325710	1.00[ASN][1000 genomes]
rs12450635	1.00[ASN][1000 genomes]
rs12450829	1.00[ASN][1000 genomes]
rs12451981	1.00[ASN][1000 genomes]
rs12452228	1.00[ASN][1000 genomes]
rs12452865	1.00[ASN][1000 genomes]
rs12453218	1.00[ASN][1000 genomes]
rs1399292	1.00[ASN][1000 genomes]
rs1399293	1.00[ASN][1000 genomes]
rs16960740	1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs16960881	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16960933	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16960958	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16961081	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16961956	1.00[ASN][1000 genomes]
rs17689830	1.00[ASN][1000 genomes]
rs17689972	1.00[ASN][1000 genomes]
rs17690009	1.00[ASN][1000 genomes]
rs17690085	1.00[ASN][1000 genomes]
rs17746268	1.00[ASN][1000 genomes]
rs17746729	1.00[ASN][1000 genomes]
rs17746759	1.00[ASN][1000 genomes]
rs17746801	1.00[ASN][1000 genomes]
rs17763241	1.00[ASN][1000 genomes]
rs17763899	1.00[ASN][1000 genomes]
rs41390346	1.00[ASN][1000 genomes]
rs55809615	1.00[ASN][1000 genomes]
rs56058698	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56288597	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56363901	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56823394	1.00[ASN][1000 genomes]
rs61339087	1.00[ASN][1000 genomes]
rs61424330	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7215849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7219811	1.00[ASN][1000 genomes]
rs7220359	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7220496	1.00[ASN][1000 genomes]
rs7224836	1.00[ASN][1000 genomes]
rs73330418	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73994741	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73994779	1.00[ASN][1000 genomes]
rs8077158	1.00[ASN][1000 genomes]
rs8077595	1.00[ASN][1000 genomes]
rs884973	1.00[CEU][hapmap]
rs9889638	1.00[ASN][1000 genomes]
rs9908359	1.00[CEU][hapmap]
rs9915344	1.00[ASN][1000 genomes]
rs9915678	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63169800-63190800	Weak transcription	Gastric	stomach
2	chr17:63176400-63223800	Weak transcription	Lung	lung
3	chr17:63180000-63194600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr17:63180600-63186800	Weak transcription	Colon Smooth Muscle	Colon
5	chr17:63180600-63194800	Weak transcription	Brain Hippocampus Middle	brain
6	chr17:63180800-63186600	Weak transcription	Brain Anterior Caudate	brain
7	chr17:63181200-63187400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr17:63181200-63192800	Weak transcription	Dnd41	blood
9	chr17:63181200-63197400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr17:63181400-63184400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr17:63181600-63186800	Weak transcription	HSMMtube	muscle
12	chr17:63181600-63189400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr17:63181800-63209600	Weak transcription	Rectal Smooth Muscle	rectum
14	chr17:63182000-63186800	Weak transcription	A549	lung
15	chr17:63182200-63187400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr17:63182200-63187800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr17:63182800-63192800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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