Variant report

Variant	rs17690009
Chromosome Location	chr17:63258340-63258341
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:63254495..63257131-chr17:63257745..63260137,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10514868	1.00[ASN][1000 genomes]
rs12325710	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12450635	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12450829	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12451981	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12452228	1.00[ASN][1000 genomes]
rs12452865	1.00[ASN][1000 genomes]
rs12453218	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1399292	1.00[ASN][1000 genomes]
rs1399293	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16960740	1.00[ASN][1000 genomes]
rs16960881	1.00[ASN][1000 genomes]
rs16960933	1.00[ASN][1000 genomes]
rs16960958	1.00[ASN][1000 genomes]
rs16961081	1.00[ASN][1000 genomes]
rs16961956	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17689830	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17689972	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17690085	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17746268	1.00[ASN][1000 genomes]
rs17746729	1.00[ASN][1000 genomes]
rs17746759	1.00[ASN][1000 genomes]
rs17746801	1.00[ASN][1000 genomes]
rs17763241	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17763899	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs41390346	1.00[ASN][1000 genomes]
rs55809615	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56058698	1.00[ASN][1000 genomes]
rs56288597	1.00[ASN][1000 genomes]
rs56363901	1.00[ASN][1000 genomes]
rs56823394	1.00[ASN][1000 genomes]
rs61339087	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61424330	1.00[ASN][1000 genomes]
rs7215849	1.00[ASN][1000 genomes]
rs7219811	1.00[ASN][1000 genomes]
rs7220359	1.00[ASN][1000 genomes]
rs7220496	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7224836	1.00[ASN][1000 genomes]
rs73330418	1.00[ASN][1000 genomes]
rs73994741	1.00[ASN][1000 genomes]
rs73994779	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8077158	1.00[ASN][1000 genomes]
rs8077595	1.00[ASN][1000 genomes]
rs9889638	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9915344	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9915678	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63253600-63260200	Weak transcription	Pancreas	Pancrea
2	chr17:63257800-63259000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr17:63258000-63258400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr17:63258000-63258600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr17:63258000-63258600	Enhancers	NH-A	brain
6	chr17:63258000-63258600	Enhancers	Osteobl	bone
7	chr17:63258000-63259000	Enhancers	Primary T cells from cord blood	blood
8	chr17:63258000-63259000	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr17:63258000-63259000	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr17:63258000-63259200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr17:63258000-63259400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr17:63258200-63258400	Enhancers	HSMM	muscle
13	chr17:63258200-63258600	Enhancers	Primary T cells fromperipheralblood	blood
14	chr17:63258200-63258600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr17:63258200-63258600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
16	chr17:63258200-63258600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr17:63258200-63258600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr17:63258200-63258600	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr17:63258200-63258600	Flanking Active TSS	HUVEC	blood vessel
20	chr17:63258200-63258600	Enhancers	NHDF-Ad	bronchial
21	chr17:63258200-63258600	Bivalent Enhancer	NHEK	skin
22	chr17:63258200-63258800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr17:63258200-63259000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr17:63258200-63259200	Enhancers	Primary T helper naive cells from peripheral blood	blood

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