Variant report

Variant	rs16961081
Chromosome Location	chr17:63193228-63193229
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:63117950..63119799-chr17:63192625..63195137,2	MCF-7	breast:
2	chr17:63187427..63189575-chr17:63192688..63195181,2	MCF-7	breast:
3	chr17:63095618..63099183-chr17:63190147..63194248,3	MCF-7	breast:
4	chr17:62971941..62974413-chr17:63192651..63194902,2	K562	blood:
5	chr17:63189920..63191548-chr17:63193224..63195844,2	MCF-7	breast:
6	chr17:62970803..62973192-chr17:63191830..63194925,3	MCF-7	breast:
7	chr17:63181223..63183452-chr17:63191533..63194430,3	MCF-7	breast:
8	chr17:63122240..63124083-chr17:63190839..63193266,2	MCF-7	breast:
9	chr17:62915725..62917635-chr17:63191194..63193457,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000263470	Chromatin interaction
ENSG00000265883	Chromatin interaction
ENSG00000214174	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10514868	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12325710	1.00[ASN][1000 genomes]
rs12450635	1.00[ASN][1000 genomes]
rs12450829	1.00[ASN][1000 genomes]
rs12451981	1.00[ASN][1000 genomes]
rs12452228	1.00[ASN][1000 genomes]
rs12452865	1.00[ASN][1000 genomes]
rs12453218	1.00[ASN][1000 genomes]
rs1399292	1.00[ASN][1000 genomes]
rs1399293	1.00[ASN][1000 genomes]
rs16960740	1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs16960881	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16960933	1.00[CEU][hapmap];0.85[YRI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16960958	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16961956	1.00[ASN][1000 genomes]
rs17689830	1.00[ASN][1000 genomes]
rs17689972	1.00[ASN][1000 genomes]
rs17690009	1.00[ASN][1000 genomes]
rs17690085	1.00[ASN][1000 genomes]
rs17746268	1.00[ASN][1000 genomes]
rs17746729	1.00[ASN][1000 genomes]
rs17746759	1.00[ASN][1000 genomes]
rs17746801	1.00[ASN][1000 genomes]
rs17763241	1.00[ASN][1000 genomes]
rs17763899	1.00[ASN][1000 genomes]
rs41390346	1.00[ASN][1000 genomes]
rs55809615	1.00[ASN][1000 genomes]
rs56058698	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56288597	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56363901	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56823394	1.00[ASN][1000 genomes]
rs61339087	1.00[ASN][1000 genomes]
rs61424330	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7215849	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7219811	1.00[ASN][1000 genomes]
rs7220359	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7220496	1.00[ASN][1000 genomes]
rs7224836	1.00[ASN][1000 genomes]
rs73330418	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73994741	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73994779	1.00[ASN][1000 genomes]
rs8077158	1.00[ASN][1000 genomes]
rs8077595	1.00[ASN][1000 genomes]
rs884973	1.00[CEU][hapmap]
rs9889638	1.00[ASN][1000 genomes]
rs9908359	1.00[CEU][hapmap]
rs9915344	1.00[ASN][1000 genomes]
rs9915678	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63176400-63223800	Weak transcription	Lung	lung
2	chr17:63180000-63194600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr17:63180600-63194800	Weak transcription	Brain Hippocampus Middle	brain
4	chr17:63181200-63197400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr17:63181800-63209600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr17:63184800-63197600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr17:63187000-63194800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr17:63188600-63197200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr17:63189000-63198000	Weak transcription	HUVEC	blood vessel
10	chr17:63189200-63200800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr17:63190000-63199400	Weak transcription	Right Atrium	heart
12	chr17:63190400-63198000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr17:63190400-63198200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr17:63191000-63193400	Weak transcription	HSMMtube	muscle
15	chr17:63191000-63194200	Weak transcription	Gastric	stomach
16	chr17:63191000-63194800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr17:63191200-63198800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr17:63192000-63194800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr17:63192600-63194200	Enhancers	Fetal Brain Male	brain
20	chr17:63192600-63194800	Weak transcription	Brain Anterior Caudate	brain
21	chr17:63192800-63193600	Enhancers	Fetal Brain Female	brain
22	chr17:63192800-63193800	Enhancers	Dnd41	blood
23	chr17:63192800-63195000	Enhancers	Fetal Thymus	thymus
24	chr17:63193000-63193800	Enhancers	Fetal Stomach	stomach
25	chr17:63193200-63194600	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr17:63193200-63195000	Enhancers	GM12878-XiMat	blood
27	chr17:63193200-63199000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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