Variant report

Variant	rs12451981
Chromosome Location	chr17:63289979-63289980
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:63284949..63286460-chr17:63288747..63290967,2	MCF-7	breast:
2	chr17:63288514..63291502-chr17:63628041..63630216,2	MCF-7	breast:
3	chr17:63289912..63290924-chr17:63552090..63553613,5	MCF-7	breast:
4	chr17:63289890..63290930-chr17:63452117..63452880,3	MCF-7	breast:
5	chr17:63289929..63290716-chr17:64161400..64162170,3	MCF-7	breast:
6	chr17:63289969..63290949-chr17:63451705..63452445,5	MCF-7	breast:
7	chr17:63289735..63290893-chr17:63552046..63553189,8	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10514868	1.00[ASN][1000 genomes]
rs12325710	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12450635	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12450829	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12452228	1.00[ASN][1000 genomes]
rs12452865	1.00[ASN][1000 genomes]
rs12453218	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1399292	1.00[ASN][1000 genomes]
rs1399293	1.00[ASN][1000 genomes]
rs16960740	1.00[ASN][1000 genomes]
rs16960881	1.00[ASN][1000 genomes]
rs16960933	1.00[ASN][1000 genomes]
rs16960958	1.00[ASN][1000 genomes]
rs16961081	1.00[ASN][1000 genomes]
rs16961956	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17689830	1.00[ASN][1000 genomes]
rs17689972	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17690009	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17690085	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17746268	1.00[ASN][1000 genomes]
rs17746729	1.00[ASN][1000 genomes]
rs17746759	1.00[ASN][1000 genomes]
rs17746801	1.00[ASN][1000 genomes]
rs17763241	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17763899	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41390346	1.00[ASN][1000 genomes]
rs55809615	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56058698	1.00[ASN][1000 genomes]
rs56288597	1.00[ASN][1000 genomes]
rs56363901	1.00[ASN][1000 genomes]
rs56823394	1.00[ASN][1000 genomes]
rs61339087	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61424330	1.00[ASN][1000 genomes]
rs7215849	1.00[ASN][1000 genomes]
rs7219811	1.00[ASN][1000 genomes]
rs7220359	1.00[ASN][1000 genomes]
rs7220496	1.00[ASN][1000 genomes]
rs7224836	1.00[ASN][1000 genomes]
rs73330418	1.00[ASN][1000 genomes]
rs73994741	1.00[ASN][1000 genomes]
rs73994779	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8077158	1.00[ASN][1000 genomes]
rs8077595	1.00[ASN][1000 genomes]
rs9889638	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9915344	1.00[ASN][1000 genomes]
rs9915678	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63284800-63290200	Weak transcription	Ovary	ovary
2	chr17:63286800-63290000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr17:63286800-63290000	Enhancers	Rectal Mucosa Donor 29	rectum
4	chr17:63286800-63290200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr17:63286800-63290200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr17:63287000-63290000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr17:63287000-63290600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr17:63287200-63290200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr17:63287200-63290200	Weak transcription	Fetal Intestine Large	intestine
10	chr17:63287200-63290200	Weak transcription	Fetal Thymus	thymus
11	chr17:63287200-63290600	Weak transcription	Gastric	stomach
12	chr17:63287200-63290600	Weak transcription	Spleen	Spleen
13	chr17:63287200-63294200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr17:63287200-63297400	Weak transcription	Right Atrium	heart
15	chr17:63287400-63290200	Weak transcription	Duodenum Mucosa	Duodenum
16	chr17:63288400-63290400	Enhancers	Stomach Mucosa	stomach
17	chr17:63288600-63290200	Weak transcription	Lung	lung
18	chr17:63288600-63290200	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr17:63288600-63290200	Enhancers	HSMMtube	muscle
20	chr17:63289600-63290200	Active TSS	Brain Germinal Matrix	brain
21	chr17:63289600-63290800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr17:63289600-63291200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
23	chr17:63289800-63290000	Weak transcription	Colonic Mucosa	Colon
24	chr17:63289800-63290000	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr17:63289800-63290800	Enhancers	H1 Cell Line	embryonic stem cell
26	chr17:63289800-63290800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr17:63289800-63290800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr17:63289800-63291000	Enhancers	HUES48 Cell Line	embryonic stem cell

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