Variant report

Variant	rs17690085
Chromosome Location	chr17:63267414-63267415
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:63252016..63254731-chr17:63266965..63269419,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10514868	1.00[ASN][1000 genomes]
rs12325710	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12450635	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12450829	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12451981	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12452228	1.00[ASN][1000 genomes]
rs12452865	1.00[ASN][1000 genomes]
rs12453218	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1399292	1.00[ASN][1000 genomes]
rs1399293	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16960740	1.00[ASN][1000 genomes]
rs16960881	1.00[ASN][1000 genomes]
rs16960933	1.00[ASN][1000 genomes]
rs16960958	1.00[ASN][1000 genomes]
rs16961081	1.00[ASN][1000 genomes]
rs16961956	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17689830	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17689972	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17690009	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17746268	1.00[ASN][1000 genomes]
rs17746729	1.00[ASN][1000 genomes]
rs17746759	1.00[ASN][1000 genomes]
rs17746801	1.00[ASN][1000 genomes]
rs17763241	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17763899	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs41390346	1.00[ASN][1000 genomes]
rs55809615	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56058698	1.00[ASN][1000 genomes]
rs56288597	1.00[ASN][1000 genomes]
rs56363901	1.00[ASN][1000 genomes]
rs56823394	1.00[ASN][1000 genomes]
rs61339087	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61424330	1.00[ASN][1000 genomes]
rs7215849	1.00[ASN][1000 genomes]
rs7219811	1.00[ASN][1000 genomes]
rs7220359	1.00[ASN][1000 genomes]
rs7220496	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7224836	1.00[ASN][1000 genomes]
rs73330418	1.00[ASN][1000 genomes]
rs73994741	1.00[ASN][1000 genomes]
rs73994779	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8077158	1.00[ASN][1000 genomes]
rs8077595	1.00[ASN][1000 genomes]
rs9889638	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9915344	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9915678	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63264600-63267800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr17:63266400-63267800	Enhancers	Fetal Stomach	stomach
3	chr17:63266600-63267600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr17:63266600-63267800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr17:63266600-63267800	Enhancers	NHDF-Ad	bronchial
6	chr17:63266800-63267600	Enhancers	Fetal Lung	lung
7	chr17:63266800-63267600	Weak transcription	Placenta	Placenta
8	chr17:63266800-63267800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr17:63266800-63268000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr17:63267000-63267600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr17:63267000-63267800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr17:63267200-63267800	Enhancers	HSMMtube	muscle
13	chr17:63267400-63267600	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr17:63267400-63267800	Enhancers	Stomach Smooth Muscle	stomach
15	chr17:63267400-63273400	Weak transcription	Fetal Thymus	thymus
16	chr17:63267400-63274600	Weak transcription	Fetal Brain Female	brain

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