Variant report

Variant	rs41390346
Chromosome Location	chr17:63324233-63324234
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10514868	1.00[ASN][1000 genomes]
rs12325710	1.00[ASN][1000 genomes]
rs12450635	1.00[ASN][1000 genomes]
rs12450829	1.00[ASN][1000 genomes]
rs12451981	1.00[ASN][1000 genomes]
rs12452865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12453218	1.00[ASN][1000 genomes]
rs1399292	1.00[ASN][1000 genomes]
rs1399293	1.00[ASN][1000 genomes]
rs16960881	1.00[ASN][1000 genomes]
rs16960933	1.00[ASN][1000 genomes]
rs16960958	1.00[ASN][1000 genomes]
rs16961081	1.00[ASN][1000 genomes]
rs16961956	1.00[ASN][1000 genomes]
rs17689830	1.00[ASN][1000 genomes]
rs17689972	1.00[ASN][1000 genomes]
rs17690009	1.00[ASN][1000 genomes]
rs17690085	1.00[ASN][1000 genomes]
rs17746268	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17746729	1.00[ASN][1000 genomes]
rs17746759	1.00[ASN][1000 genomes]
rs17746801	1.00[ASN][1000 genomes]
rs17763241	1.00[ASN][1000 genomes]
rs17763899	1.00[ASN][1000 genomes]
rs55809615	1.00[ASN][1000 genomes]
rs56058698	1.00[ASN][1000 genomes]
rs56288597	1.00[ASN][1000 genomes]
rs56363901	1.00[ASN][1000 genomes]
rs60618269	1.00[ASN][1000 genomes]
rs61339087	1.00[ASN][1000 genomes]
rs61424330	1.00[ASN][1000 genomes]
rs6504293	0.97[EUR][1000 genomes]
rs7215849	1.00[ASN][1000 genomes]
rs7219811	1.00[ASN][1000 genomes]
rs7220359	1.00[ASN][1000 genomes]
rs7220496	1.00[ASN][1000 genomes]
rs7224836	1.00[ASN][1000 genomes]
rs73330418	1.00[ASN][1000 genomes]
rs73994741	1.00[ASN][1000 genomes]
rs73994779	1.00[ASN][1000 genomes]
rs8077158	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8077595	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9889638	1.00[ASN][1000 genomes]
rs9915344	1.00[ASN][1000 genomes]
rs9915678	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv575873	chr17:63323581-63371880	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63322000-63324400	Weak transcription	Rectal Mucosa Donor 31	rectum

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