Variant report

Variant	rs12453218
Chromosome Location	chr17:63284330-63284331
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10514868	1.00[ASN][1000 genomes]
rs12325710	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12450635	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12450829	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12451981	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12452228	1.00[ASN][1000 genomes]
rs12452865	1.00[ASN][1000 genomes]
rs1399292	1.00[ASN][1000 genomes]
rs1399293	1.00[ASN][1000 genomes]
rs16960740	1.00[ASN][1000 genomes]
rs16960881	1.00[ASN][1000 genomes]
rs16960933	1.00[ASN][1000 genomes]
rs16960958	1.00[ASN][1000 genomes]
rs16961081	1.00[ASN][1000 genomes]
rs16961956	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17689830	1.00[ASN][1000 genomes]
rs17689972	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17690009	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17690085	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17746268	1.00[ASN][1000 genomes]
rs17746729	1.00[ASN][1000 genomes]
rs17746759	1.00[ASN][1000 genomes]
rs17746801	1.00[ASN][1000 genomes]
rs17763241	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17763899	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41390346	1.00[ASN][1000 genomes]
rs55809615	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56058698	1.00[ASN][1000 genomes]
rs56288597	1.00[ASN][1000 genomes]
rs56363901	1.00[ASN][1000 genomes]
rs56823394	1.00[ASN][1000 genomes]
rs61339087	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61424330	1.00[ASN][1000 genomes]
rs7215849	1.00[ASN][1000 genomes]
rs7219811	1.00[ASN][1000 genomes]
rs7220359	1.00[ASN][1000 genomes]
rs7220496	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7224836	1.00[ASN][1000 genomes]
rs73330418	1.00[ASN][1000 genomes]
rs73994741	1.00[ASN][1000 genomes]
rs73994779	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8077158	1.00[ASN][1000 genomes]
rs8077595	1.00[ASN][1000 genomes]
rs9889638	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9915344	1.00[ASN][1000 genomes]
rs9915678	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63279600-63286800	Weak transcription	Right Atrium	heart
2	chr17:63280600-63284800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr17:63280600-63285400	Weak transcription	Stomach Mucosa	stomach
4	chr17:63280600-63285800	Weak transcription	HUVEC	blood vessel
5	chr17:63281000-63286200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr17:63282600-63284400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr17:63283800-63284600	Weak transcription	Ovary	ovary
8	chr17:63283800-63286000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr17:63283800-63286600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr17:63283800-63286600	Weak transcription	Fetal Heart	heart
11	chr17:63284000-63285800	Enhancers	Colonic Mucosa	Colon
12	chr17:63284000-63286600	Weak transcription	Lung	lung
13	chr17:63284000-63286600	Weak transcription	Spleen	Spleen

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