Variant report

Variant	rs11658736
Chromosome Location	chr17:63179400-63179401
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:63178028..63180075-chr17:63181062..63183673,2	K562	blood:
2	chr17:63117639..63119496-chr17:63177929..63179773,2	MCF-7	breast:
3	chr17:63173795..63175589-chr17:63177989..63180729,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000265883	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10514867	0.94[ASN][1000 genomes]
rs11650746	0.94[ASN][1000 genomes]
rs11651062	0.94[ASN][1000 genomes]
rs11651081	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11654243	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11654391	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11657250	0.94[ASN][1000 genomes]
rs11658655	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11658673	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11658773	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1514500	0.81[ASN][1000 genomes]
rs16960903	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16960905	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16960920	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16960957	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16961273	0.94[ASN][1000 genomes]
rs28451574	0.81[ASN][1000 genomes]
rs28525077	0.81[ASN][1000 genomes]
rs2869578	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2869579	0.94[ASN][1000 genomes]
rs2869580	0.94[ASN][1000 genomes]
rs2869582	0.94[ASN][1000 genomes]
rs2869584	0.94[ASN][1000 genomes]
rs4293415	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4588019	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4791223	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4791227	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4791228	0.82[EUR][1000 genomes]
rs55948632	0.81[ASN][1000 genomes]
rs55948933	0.94[ASN][1000 genomes]
rs56102951	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59173947	0.81[ASN][1000 genomes]
rs61708414	0.81[ASN][1000 genomes]
rs7207726	0.83[EUR][1000 genomes]
rs7211341	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7215502	0.94[ASN][1000 genomes]
rs7220710	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7220949	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7221103	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73330407	0.87[ASN][1000 genomes]
rs73347632	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8065725	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8071603	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8072543	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8072633	0.94[ASN][1000 genomes]
rs8080929	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs908089	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs925674	0.88[ASN][1000 genomes]
rs9889653	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9900568	0.94[ASN][1000 genomes]
rs9900709	0.94[ASN][1000 genomes]
rs9904207	0.81[ASN][1000 genomes]
rs9907146	0.94[ASN][1000 genomes]
rs9907374	0.87[ASN][1000 genomes]
rs9908359	0.87[ASN][1000 genomes]
rs9914418	0.94[ASN][1000 genomes]
rs9914790	0.94[ASN][1000 genomes]
rs9916092	0.94[ASN][1000 genomes]
rs9916789	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63157000-63179800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr17:63160000-63180400	Weak transcription	Brain Substantia Nigra	brain
3	chr17:63169800-63190800	Weak transcription	Gastric	stomach
4	chr17:63170000-63180200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr17:63173000-63179800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr17:63173400-63179800	Weak transcription	Aorta	Aorta
7	chr17:63173600-63180000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr17:63174400-63179800	Weak transcription	NH-A	brain
9	chr17:63174400-63180000	Weak transcription	Osteobl	bone
10	chr17:63175000-63179400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr17:63175400-63179600	Weak transcription	Stomach Smooth Muscle	stomach
12	chr17:63175400-63179800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr17:63175400-63179800	Weak transcription	Brain Hippocampus Middle	brain
14	chr17:63176000-63179600	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr17:63176000-63180000	Weak transcription	NHLF	lung
16	chr17:63176000-63181000	Weak transcription	Fetal Kidney	kidney
17	chr17:63176200-63179600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr17:63176200-63179600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr17:63176200-63179800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr17:63176200-63179800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr17:63176200-63180400	Weak transcription	Brain Angular Gyrus	brain
22	chr17:63176200-63180400	Weak transcription	Brain Cingulate Gyrus	brain
23	chr17:63176400-63179600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr17:63176400-63179600	Weak transcription	Fetal Brain Male	brain
25	chr17:63176400-63179800	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr17:63176400-63179800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr17:63176400-63179800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr17:63176400-63179800	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr17:63176400-63180000	Weak transcription	Brain Anterior Caudate	brain
30	chr17:63176400-63223800	Weak transcription	Lung	lung
31	chr17:63176600-63179600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr17:63176600-63180600	Enhancers	Primary T cells fromperipheralblood	blood
33	chr17:63177600-63179800	Enhancers	Spleen	Spleen
34	chr17:63178000-63181600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr17:63178200-63179800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr17:63178400-63179800	Enhancers	ES-I3 Cell Line	embryonic stem cell
37	chr17:63178400-63179800	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr17:63178400-63180600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr17:63178400-63181200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr17:63178400-63181200	Enhancers	HUVEC	blood vessel
41	chr17:63178600-63179400	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr17:63178800-63179400	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr17:63178800-63179800	Enhancers	GM12878-XiMat	blood
44	chr17:63178800-63181400	Weak transcription	K562	blood
45	chr17:63178800-63182000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr17:63178800-63182200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr17:63179000-63179600	Weak transcription	Placenta	Placenta
48	chr17:63179000-63179800	Enhancers	iPS-20b Cell Line	embryonic stem cell
49	chr17:63179000-63179800	Weak transcription	Rectal Smooth Muscle	rectum
50	chr17:63179000-63180800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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