Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12943735	1.00[ASN][1000 genomes]
rs1514500	0.89[EUR][1000 genomes]
rs17688887	1.00[ASN][1000 genomes]
rs28451574	0.88[EUR][1000 genomes]
rs28525077	0.88[EUR][1000 genomes]
rs28542898	1.00[ASN][1000 genomes]
rs2869579	0.85[EUR][1000 genomes]
rs2869580	0.85[EUR][1000 genomes]
rs2869581	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2869582	0.85[EUR][1000 genomes]
rs2869583	1.00[ASN][1000 genomes]
rs2869584	0.85[EUR][1000 genomes]
rs55686226	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55904132	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55948933	0.85[EUR][1000 genomes]
rs59173947	0.89[EUR][1000 genomes]
rs59885956	1.00[ASN][1000 genomes]
rs61708414	0.89[EUR][1000 genomes]
rs62065135	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7211964	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7215502	0.85[EUR][1000 genomes]
rs73994748	1.00[ASN][1000 genomes]
rs9900568	0.84[EUR][1000 genomes]
rs9900709	0.85[EUR][1000 genomes]
rs9904207	0.89[EUR][1000 genomes]
rs9907146	0.85[EUR][1000 genomes]
rs9914418	0.85[EUR][1000 genomes]
rs9914790	0.85[EUR][1000 genomes]
rs9916092	0.87[EUR][1000 genomes]
rs9916373	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9916789	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63232400-63236200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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