Variant report

Variant	rs4790949
Chromosome Location	chr17:63293160-63293161
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1011900	0.86[ASN][1000 genomes]
rs1514502	0.81[AMR][1000 genomes]
rs16961976	0.86[ASN][1000 genomes]
rs16962041	0.84[AMR][1000 genomes]
rs1860557	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs2109446	0.81[AMR][1000 genomes]
rs28377838	0.88[ASN][1000 genomes]
rs2869822	0.87[ASN][1000 genomes]
rs4790950	0.82[ASN][1000 genomes]
rs4790951	0.83[ASN][1000 genomes]
rs4791204	0.86[ASN][1000 genomes]
rs4791205	0.86[ASN][1000 genomes]
rs55972864	0.86[ASN][1000 genomes]
rs56007713	0.93[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs56299799	0.85[ASN][1000 genomes]
rs7206992	0.82[ASN][1000 genomes]
rs7208337	0.82[ASN][1000 genomes]
rs7217286	0.87[AMR][1000 genomes]
rs7217516	0.83[ASN][1000 genomes]
rs7217967	0.86[AMR][1000 genomes]
rs7224599	0.87[ASN][1000 genomes]
rs72845338	0.81[AMR][1000 genomes]
rs72845354	0.86[ASN][1000 genomes]
rs72845356	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs72845357	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72845372	0.87[ASN][1000 genomes]
rs72853508	0.88[ASN][1000 genomes]
rs72853520	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs8067633	0.84[ASN][1000 genomes]
rs8081577	0.84[ASN][1000 genomes]
rs9896306	0.85[ASN][1000 genomes]
rs9896684	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63287200-63294200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr17:63287200-63297400	Weak transcription	Right Atrium	heart
3	chr17:63290800-63294000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr17:63290800-63300200	Weak transcription	Fetal Lung	lung
5	chr17:63290800-63301200	Weak transcription	Pancreas	Pancrea
6	chr17:63291000-63293600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr17:63291000-63294000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr17:63291000-63294000	Weak transcription	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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