Variant report

Variant	rs1860557
Chromosome Location	chr17:63297820-63297821
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1514502	0.85[AMR][1000 genomes]
rs16962041	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2109446	0.84[AMR][1000 genomes]
rs4790949	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs4791209	0.82[AMR][1000 genomes]
rs56007713	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57715929	0.81[AMR][1000 genomes]
rs7217286	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7217967	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7225676	0.86[ASN][1000 genomes]
rs72845338	0.85[AMR][1000 genomes]
rs72845356	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72845357	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72853520	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63290800-63300200	Weak transcription	Fetal Lung	lung
2	chr17:63290800-63301200	Weak transcription	Pancreas	Pancrea

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links