Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12051686	0.89[ASN][1000 genomes]
rs12602631	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1514502	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs16961965	0.81[ASN][1000 genomes]
rs2109446	0.93[AMR][1000 genomes]
rs2191396	0.95[ASN][1000 genomes]
rs2869590	0.92[ASN][1000 genomes]
rs4790952	0.90[ASN][1000 genomes]
rs4791208	0.83[ASN][1000 genomes]
rs4791209	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4791210	0.94[ASN][1000 genomes]
rs55940010	0.83[ASN][1000 genomes]
rs56007713	0.80[AMR][1000 genomes]
rs57124114	0.80[ASN][1000 genomes]
rs57715929	0.85[AMR][1000 genomes]
rs7217967	0.80[AMR][1000 genomes]
rs72845321	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72845331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72845338	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72845356	0.85[AMR][1000 genomes]
rs72845357	0.85[AMR][1000 genomes]
rs740857	0.94[ASN][1000 genomes]
rs875647	0.92[ASN][1000 genomes]
rs876404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9904971	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63259000-63264400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr17:63259200-63264600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr17:63260600-63262400	Enhancers	Primary T cells from cord blood	blood
4	chr17:63260800-63262400	Enhancers	HUVEC	blood vessel
5	chr17:63261000-63262200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr17:63261200-63262000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr17:63261200-63262200	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr17:63261400-63262000	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr17:63261400-63262000	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr17:63261400-63262400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr17:63261600-63262200	Enhancers	Primary T cells fromperipheralblood	blood
12	chr17:63261600-63262400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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