Variant report

Variant	rs9904971
Chromosome Location	chr17:63265257-63265258
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12051686	0.92[ASN][1000 genomes]
rs12602631	0.94[ASN][1000 genomes]
rs1514502	0.96[ASN][1000 genomes]
rs16961958	0.94[ASN][1000 genomes]
rs16961965	0.87[ASN][1000 genomes]
rs16961970	0.82[ASN][1000 genomes]
rs16961972	0.82[ASN][1000 genomes]
rs16961974	0.81[ASN][1000 genomes]
rs2191396	0.99[ASN][1000 genomes]
rs2869590	0.97[ASN][1000 genomes]
rs4790952	0.95[ASN][1000 genomes]
rs4791207	0.84[ASN][1000 genomes]
rs4791208	0.88[ASN][1000 genomes]
rs4791209	0.96[ASN][1000 genomes]
rs4791210	0.96[ASN][1000 genomes]
rs55940010	0.88[ASN][1000 genomes]
rs56299799	0.83[EUR][1000 genomes]
rs57124114	0.83[ASN][1000 genomes]
rs72845331	0.94[ASN][1000 genomes]
rs72845338	0.96[ASN][1000 genomes]
rs740856	0.81[EUR][1000 genomes]
rs740857	0.99[ASN][1000 genomes]
rs8070105	0.81[ASN][1000 genomes]
rs875647	0.97[ASN][1000 genomes]
rs876404	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63264400-63265800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr17:63264600-63265600	Enhancers	NHDF-Ad	bronchial
3	chr17:63264600-63266000	Enhancers	Muscle Satellite Cultured Cells	--
4	chr17:63264600-63266000	Enhancers	Osteobl	bone
5	chr17:63264600-63267800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr17:63264800-63265400	Enhancers	HSMMtube	muscle
7	chr17:63264800-63265600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr17:63264800-63265600	Enhancers	HSMM	muscle
9	chr17:63264800-63265600	Enhancers	HUVEC	blood vessel
10	chr17:63265200-63265600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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