Variant report

Variant	rs12051686
Chromosome Location	chr17:63260406-63260407
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs12602631	0.89[ASN][1000 genomes]
rs1514502	0.94[ASN][1000 genomes]
rs16961958	0.89[ASN][1000 genomes]
rs16961965	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1962808	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2159539	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2191396	0.91[ASN][1000 genomes]
rs2869590	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2869823	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2869824	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2869825	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2904204	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4547370	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4790950	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4790952	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4791208	0.81[ASN][1000 genomes]
rs4791209	0.94[ASN][1000 genomes]
rs4791210	0.94[ASN][1000 genomes]
rs55940010	0.81[ASN][1000 genomes]
rs6504291	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs718597	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7206992	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7208337	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7216343	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7217516	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7224599	0.81[AMR][1000 genomes]
rs7225676	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72845331	0.89[ASN][1000 genomes]
rs72845338	0.94[ASN][1000 genomes]
rs740857	0.90[ASN][1000 genomes]
rs8067633	0.81[EUR][1000 genomes]
rs8075545	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8081577	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs875647	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs876404	0.88[ASN][1000 genomes]
rs9904971	0.92[ASN][1000 genomes]
rs9915740	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63258600-63261600	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr17:63258800-63261200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr17:63259000-63261200	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr17:63259000-63261400	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr17:63259000-63261600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr17:63259000-63264400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr17:63259200-63260800	Weak transcription	HUVEC	blood vessel
8	chr17:63259200-63261400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr17:63259200-63264600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr17:63259400-63261000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr17:63260400-63261400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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