Variant report

Variant	rs561828619
Chromosome Location	chr9:21558707-21558708
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:76135557..76136462-chr9:21558206..21559124,2	HCT-116	colon:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031432	chr9:21472601-21608774	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
2	nsv540085	chr9:21472601-21608774	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
3	nsv1029634	chr9:21542970-21765286	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	esv3406465	chr9:21558577-21561125	Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21554800-21558800	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr9:21554800-21560600	Active TSS	Breast Myoepithelial Primary Cells	Breast
3	chr9:21555200-21560000	Active TSS	Hela-S3	cervix
4	chr9:21555200-21560800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr9:21555800-21560200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr9:21556200-21559200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:21556200-21559200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr9:21556200-21560000	Active TSS	HMEC	breast
9	chr9:21556200-21560200	Active TSS	NH-A	brain
10	chr9:21556200-21560200	Active TSS	Osteobl	bone
11	chr9:21556200-21560400	Active TSS	NHLF	lung
12	chr9:21556400-21560000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr9:21556400-21560400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr9:21556400-21560600	Active TSS	NHDF-Ad	bronchial
15	chr9:21556600-21560200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr9:21557000-21558800	Active TSS	Stomach Mucosa	stomach
17	chr9:21557000-21560400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
18	chr9:21557400-21559400	Transcr. at gene 5' and 3'	A549	lung
19	chr9:21557400-21560000	Active TSS	HUVEC	blood vessel
20	chr9:21558000-21558800	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
21	chr9:21558000-21558800	Transcr. at gene 5' and 3'	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr9:21558200-21558800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
23	chr9:21558200-21558800	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
24	chr9:21558200-21559200	Transcr. at gene 5' and 3'	NHEK	skin
25	chr9:21558200-21560200	Active TSS	ES-I3 Cell Line	embryonic stem cell
26	chr9:21558200-21560200	Bivalent/Poised TSS	Fetal Intestine Large	intestine
27	chr9:21558200-21560400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
28	chr9:21558200-21560600	Active TSS	HSMM	muscle
29	chr9:21558200-21560800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
30	chr9:21558400-21558800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
31	chr9:21558400-21558800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
32	chr9:21558400-21558800	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
33	chr9:21558400-21559200	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
34	chr9:21558400-21560200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr9:21558400-21560400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr9:21558400-21560400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
37	chr9:21558600-21558800	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
38	chr9:21558600-21558800	Bivalent Enhancer	Primary hematopoietic stem cells	blood
39	chr9:21558600-21558800	Flanking Bivalent TSS/Enh	Primary T helper naive cells from peripheral blood	blood
40	chr9:21558600-21558800	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
41	chr9:21558600-21558800	Flanking Bivalent TSS/Enh	Primary Natural Killer cells fromperipheralblood	blood
42	chr9:21558600-21558800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr9:21558600-21558800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr9:21558600-21558800	Bivalent Enhancer	Adipose Nuclei	Adipose
45	chr9:21558600-21558800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
46	chr9:21558600-21558800	Enhancers	Placenta	Placenta
47	chr9:21558600-21558800	Bivalent Enhancer	Fetal Thymus	thymus
48	chr9:21558600-21558800	Bivalent Enhancer	Rectal Mucosa Donor 29	rectum
49	chr9:21558600-21558800	Bivalent/Poised TSS	Monocytes-CD14+_RO01746	blood
50	chr9:21558600-21559000	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links