Variant report

Variant	rs56184619
Chromosome Location	chr9:72661761-72661762
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs55934562	0.90[AFR][1000 genomes]
rs61315417	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1049457	chr9:72539144-72765913	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv831613	chr9:72586058-72740061	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72658200-72662600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr9:72658600-72662200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr9:72659600-72663400	Weak transcription	Spleen	Spleen
4	chr9:72659600-72663800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr9:72659800-72661800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr9:72659800-72662000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
7	chr9:72659800-72663800	Weak transcription	Fetal Heart	heart
8	chr9:72659800-72664200	Weak transcription	Brain Germinal Matrix	brain
9	chr9:72660000-72662000	Active TSS	Adipose Nuclei	Adipose
10	chr9:72660000-72662200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr9:72660000-72663600	Weak transcription	Brain Hippocampus Middle	brain
12	chr9:72660000-72663800	Weak transcription	Brain Anterior Caudate	brain
13	chr9:72660000-72663800	Weak transcription	Osteobl	bone
14	chr9:72660000-72664600	Weak transcription	Brain Cingulate Gyrus	brain
15	chr9:72660000-72665200	Transcr. at gene 5' and 3'	HSMMtube	muscle
16	chr9:72660000-72668400	Weak transcription	HUVEC	blood vessel
17	chr9:72660200-72661800	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr9:72660200-72661800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr9:72660200-72661800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr9:72660200-72662000	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr9:72660200-72662400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr9:72660200-72663600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr9:72660200-72663600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr9:72660200-72663600	Weak transcription	Psoas Muscle	Psoas
25	chr9:72660200-72663600	Weak transcription	NHLF	lung
26	chr9:72660200-72664000	Weak transcription	Right Ventricle	heart
27	chr9:72660200-72668200	Weak transcription	Pancreas	Pancrea
28	chr9:72660200-72668400	Weak transcription	Gastric	stomach
29	chr9:72660400-72663000	Transcr. at gene 5' and 3'	Stomach Smooth Muscle	stomach
30	chr9:72660400-72663600	Weak transcription	NHDF-Ad	bronchial
31	chr9:72660600-72661800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr9:72660600-72662200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
33	chr9:72660600-72664000	Weak transcription	Duodenum Mucosa	Duodenum
34	chr9:72660800-72661800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr9:72661000-72661800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr9:72661000-72661800	Enhancers	Placenta	Placenta
37	chr9:72661000-72661800	Flanking Active TSS	Ovary	ovary
38	chr9:72661000-72661800	Enhancers	NH-A	brain
39	chr9:72661000-72665000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr9:72661200-72661800	Enhancers	H1 Cell Line	embryonic stem cell
41	chr9:72661200-72661800	Enhancers	HUES48 Cell Line	embryonic stem cell
42	chr9:72661200-72661800	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr9:72661200-72661800	Enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr9:72661200-72661800	Enhancers	Aorta	Aorta
45	chr9:72661200-72661800	Enhancers	Colonic Mucosa	Colon
46	chr9:72661200-72661800	Enhancers	Skeletal Muscle Female	skeletal muscle
47	chr9:72661200-72661800	Flanking Active TSS	HSMM	muscle
48	chr9:72661200-72662000	Enhancers	HUES6 Cell Line	embryonic stem cell
49	chr9:72661200-72662000	Enhancers	Fetal Muscle Leg	muscle
50	chr9:72661200-72662200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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