Variant report

Variant	rs56186058
Chromosome Location	chr3:98072002-98072003
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:98071996-98072048	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
OR5K4	TF binding region

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1497546	0.84[EUR][1000 genomes]
rs55800540	0.96[EUR][1000 genomes]
rs55817294	0.84[EUR][1000 genomes]
rs55836250	0.96[EUR][1000 genomes]
rs55848866	0.96[EUR][1000 genomes]
rs56115538	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56331876	0.96[EUR][1000 genomes]
rs56347336	0.96[EUR][1000 genomes]
rs56782837	0.96[EUR][1000 genomes]
rs58784693	0.84[EUR][1000 genomes]
rs59191375	0.84[EUR][1000 genomes]
rs59949657	0.96[EUR][1000 genomes]
rs60249448	0.96[EUR][1000 genomes]
rs60896887	0.96[EUR][1000 genomes]
rs61310789	0.84[EUR][1000 genomes]
rs61483213	0.84[EUR][1000 genomes]
rs61578197	0.96[EUR][1000 genomes]
rs62267361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62267362	0.96[EUR][1000 genomes]
rs62267365	0.84[EUR][1000 genomes]
rs62267366	0.84[EUR][1000 genomes]
rs62267368	0.96[EUR][1000 genomes]
rs62267373	0.84[EUR][1000 genomes]
rs62267374	0.96[EUR][1000 genomes]
rs62267375	0.84[EUR][1000 genomes]
rs62267376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62267377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62267379	0.96[EUR][1000 genomes]
rs62268282	0.96[EUR][1000 genomes]
rs62268291	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62268890	0.89[AFR][1000 genomes]
rs62268895	0.80[AFR][1000 genomes]
rs62268918	0.84[EUR][1000 genomes]
rs62268930	0.96[EUR][1000 genomes]
rs62270682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62270685	0.84[EUR][1000 genomes]
rs6786806	0.96[EUR][1000 genomes]
rs72937135	0.96[EUR][1000 genomes]
rs7628736	0.96[EUR][1000 genomes]
rs7640176	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004820	chr3:97852875-98169488	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1000834	chr3:97859880-98095473	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	esv1842860	chr3:97934241-98075543	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1009918	chr3:97946030-98155450	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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