Variant report
Variant | rs62268291 |
---|---|
Chromosome Location | chr3:98087820-98087821 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr3:98086429..98088242-chr3:98311921..98314388,2 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000080819 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs1497546 | 0.84[EUR][1000 genomes] |
rs55800540 | 0.96[EUR][1000 genomes] |
rs55817294 | 0.84[EUR][1000 genomes] |
rs55836250 | 0.96[EUR][1000 genomes] |
rs55848866 | 0.96[EUR][1000 genomes] |
rs56115538 | 0.96[EUR][1000 genomes] |
rs56186058 | 1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs56331876 | 0.96[EUR][1000 genomes] |
rs56347336 | 0.96[EUR][1000 genomes] |
rs56782837 | 0.96[EUR][1000 genomes] |
rs58784693 | 0.84[EUR][1000 genomes] |
rs59191375 | 0.84[EUR][1000 genomes] |
rs59949657 | 0.96[EUR][1000 genomes] |
rs60249448 | 0.96[EUR][1000 genomes] |
rs60896887 | 0.96[EUR][1000 genomes] |
rs61310789 | 0.84[EUR][1000 genomes] |
rs61483213 | 0.84[EUR][1000 genomes] |
rs61578197 | 0.96[EUR][1000 genomes] |
rs62267361 | 0.96[EUR][1000 genomes] |
rs62267362 | 0.96[EUR][1000 genomes] |
rs62267365 | 0.84[EUR][1000 genomes] |
rs62267366 | 0.84[EUR][1000 genomes] |
rs62267368 | 0.96[EUR][1000 genomes] |
rs62267373 | 0.84[EUR][1000 genomes] |
rs62267374 | 0.96[EUR][1000 genomes] |
rs62267375 | 0.84[EUR][1000 genomes] |
rs62267376 | 0.96[EUR][1000 genomes] |
rs62267377 | 0.96[EUR][1000 genomes] |
rs62267379 | 0.96[EUR][1000 genomes] |
rs62268282 | 0.96[EUR][1000 genomes] |
rs62268918 | 0.84[EUR][1000 genomes] |
rs62268930 | 0.96[EUR][1000 genomes] |
rs62270682 | 0.96[EUR][1000 genomes] |
rs62270685 | 0.84[EUR][1000 genomes] |
rs6786806 | 0.96[EUR][1000 genomes] |
rs72937135 | 0.96[EUR][1000 genomes] |
rs7628736 | 0.96[EUR][1000 genomes] |
rs7640176 | 0.84[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1004820 | chr3:97852875-98169488 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
2 | nsv1000834 | chr3:97859880-98095473 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
3 | nsv1009918 | chr3:97946030-98155450 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
No data |