Variant report

Variant	rs56188040
Chromosome Location	chr3:59492960-59492961
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11710236	1.00[ASN][1000 genomes]
rs11716758	1.00[ASN][1000 genomes]
rs1502616	1.00[ASN][1000 genomes]
rs17060864	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17060872	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17060880	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17060881	1.00[ASN][1000 genomes]
rs17060901	1.00[ASN][1000 genomes]
rs35769758	1.00[ASN][1000 genomes]
rs57453654	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62250726	1.00[ASN][1000 genomes]
rs62250728	1.00[ASN][1000 genomes]
rs6768376	1.00[ASN][1000 genomes]
rs6798519	1.00[ASN][1000 genomes]
rs73084821	1.00[ASN][1000 genomes]
rs73099746	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73837332	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73837338	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73837342	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73837345	1.00[ASN][1000 genomes]
rs73837346	1.00[ASN][1000 genomes]
rs73837349	1.00[ASN][1000 genomes]
rs73837350	1.00[ASN][1000 genomes]
rs73837352	1.00[ASN][1000 genomes]
rs73837356	1.00[ASN][1000 genomes]
rs9857745	1.00[ASN][1000 genomes]
rs9871074	1.00[ASN][1000 genomes]
rs9875227	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011181	chr3:58665373-59542339	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv536574	chr3:58665373-59542339	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv534257	chr3:58855959-59606464	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv998676	chr3:59485915-59519363	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv2149596	chr3:59492886-59493347	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59492400-59501000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr3:59492600-59496400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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