Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11710236	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11716758	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1502616	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17060864	1.00[ASN][1000 genomes]
rs17060872	1.00[ASN][1000 genomes]
rs17060880	1.00[ASN][1000 genomes]
rs17060881	1.00[ASN][1000 genomes]
rs17060901	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35769758	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56188040	1.00[ASN][1000 genomes]
rs57453654	1.00[ASN][1000 genomes]
rs62250728	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6768376	1.00[ASN][1000 genomes]
rs6798519	1.00[ASN][1000 genomes]
rs73084821	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73837332	1.00[ASN][1000 genomes]
rs73837338	1.00[ASN][1000 genomes]
rs73837342	1.00[ASN][1000 genomes]
rs73837345	1.00[ASN][1000 genomes]
rs73837346	1.00[ASN][1000 genomes]
rs73837349	1.00[ASN][1000 genomes]
rs73837350	1.00[ASN][1000 genomes]
rs73837352	1.00[ASN][1000 genomes]
rs73837356	1.00[ASN][1000 genomes]
rs9857745	1.00[ASN][1000 genomes]
rs9871074	1.00[ASN][1000 genomes]
rs9875227	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011181	chr3:58665373-59542339	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv536574	chr3:58665373-59542339	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv534257	chr3:58855959-59606464	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv876836	chr3:59500394-59664687	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59526600-59531600	Weak transcription	Fetal Brain Female	brain
2	chr3:59526800-59531400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:59526800-59535800	Weak transcription	Brain Germinal Matrix	brain
4	chr3:59529000-59531600	Enhancers	Dnd41	blood
5	chr3:59529800-59531800	Enhancers	Fetal Brain Male	brain
6	chr3:59530800-59531600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:59530800-59531600	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr3:59530800-59531600	Enhancers	NH-A	brain
9	chr3:59531000-59531400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:59531000-59531600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:59531000-59531600	Enhancers	Esophagus	oesophagus
12	chr3:59531000-59531800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr3:59531200-59531600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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