Variant report

Variant	rs56189731
Chromosome Location	chr6:131612504-131612505
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1317667	0.91[EUR][1000 genomes]
rs1322596	0.91[EUR][1000 genomes]
rs1570348	0.91[EUR][1000 genomes]
rs17573187	0.88[EUR][1000 genomes]
rs17651753	0.89[EUR][1000 genomes]
rs17787964	0.82[EUR][1000 genomes]
rs35673664	1.00[ASN][1000 genomes]
rs3777487	0.98[EUR][1000 genomes]
rs3777493	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3903759	0.83[EUR][1000 genomes]
rs55893652	0.87[EUR][1000 genomes]
rs56059672	0.88[EUR][1000 genomes]
rs56318353	0.83[EUR][1000 genomes]
rs6937607	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73631985	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73634710	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7743894	0.88[EUR][1000 genomes]
rs7754007	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492861	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv886664	chr6:131443843-131754930	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv830808	chr6:131521115-131735320	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv886666	chr6:131573433-131666295	Weak transcription Genic enhancers Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131571800-131614400	Weak transcription	Gastric	stomach
2	chr6:131572200-131613000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:131587400-131614400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:131591000-131614800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr6:131597200-131613200	Weak transcription	Ovary	ovary
6	chr6:131602800-131612800	Weak transcription	HepG2	liver
7	chr6:131602800-131613200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:131603200-131613000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr6:131603200-131613200	Weak transcription	Left Ventricle	heart
10	chr6:131603200-131613800	Weak transcription	Right Atrium	heart
11	chr6:131603200-131614600	Weak transcription	Lung	lung
12	chr6:131603400-131613000	Weak transcription	Adipose Nuclei	Adipose
13	chr6:131603400-131613400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr6:131603400-131613400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:131603400-131613400	Weak transcription	Psoas Muscle	Psoas
16	chr6:131603400-131613600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr6:131603800-131613400	Weak transcription	Primary B cells from peripheral blood	blood
18	chr6:131603800-131613400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr6:131603800-131613600	Weak transcription	Primary B cells from cord blood	blood
20	chr6:131604000-131613600	Weak transcription	Brain Cingulate Gyrus	brain
21	chr6:131604200-131613400	Weak transcription	Brain Hippocampus Middle	brain
22	chr6:131604200-131613800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr6:131604800-131613000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:131605200-131612800	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr6:131605200-131613200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr6:131605400-131613200	Weak transcription	Fetal Heart	heart
27	chr6:131605400-131613400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr6:131605600-131613000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr6:131606200-131612800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr6:131606200-131613400	Weak transcription	Brain Anterior Caudate	brain
31	chr6:131606400-131613000	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr6:131606400-131613000	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr6:131606400-131613000	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr6:131606400-131613200	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr6:131606400-131613200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr6:131606400-131613400	Weak transcription	Fetal Thymus	thymus
37	chr6:131606400-131613400	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr6:131606400-131613600	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr6:131606400-131614600	Weak transcription	Duodenum Mucosa	Duodenum
40	chr6:131607000-131612800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr6:131607000-131613000	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr6:131607400-131612600	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr6:131607600-131613000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr6:131607800-131613200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr6:131608000-131613000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr6:131608800-131613000	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr6:131608800-131613200	Weak transcription	Fetal Lung	lung
48	chr6:131609600-131613000	Weak transcription	Primary T cells from cord blood	blood
49	chr6:131609600-131613000	Weak transcription	Fetal Muscle Leg	muscle
50	chr6:131610000-131613000	Weak transcription	Fetal Intestine Small	intestine

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