Variant report

Variant	rs7754007
Chromosome Location	chr6:131615814-131615815
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:131614360..131616508-chr6:131705803..131707677,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1317667	0.91[EUR][1000 genomes]
rs1322596	0.91[EUR][1000 genomes]
rs1570348	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs17573187	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs17651753	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs17787964	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs35673664	1.00[ASN][1000 genomes]
rs3777487	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs3777493	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3903759	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs55893652	0.87[EUR][1000 genomes]
rs56059672	0.88[EUR][1000 genomes]
rs56189731	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56318353	0.83[EUR][1000 genomes]
rs6937607	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73631985	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73634710	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7743894	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs9492861	1.00[CEU][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv886664	chr6:131443843-131754930	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv830808	chr6:131521115-131735320	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv886666	chr6:131573433-131666295	Weak transcription Genic enhancers Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131612400-131616400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:131612800-131616600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:131613000-131616400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:131614200-131616000	Enhancers	Stomach Mucosa	stomach
5	chr6:131614800-131616200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:131614800-131616400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:131614800-131619000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr6:131614800-131620000	Weak transcription	Spleen	Spleen
9	chr6:131614800-131624800	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr6:131615000-131616200	Weak transcription	Pancreas	Pancrea
11	chr6:131615000-131616400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
12	chr6:131615000-131617000	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr6:131615000-131620600	Active TSS	iPS-15b Cell Line	embryonic stem cell
14	chr6:131615000-131622400	Weak transcription	Lung	lung
15	chr6:131615000-131623800	Weak transcription	Primary T cells from cord blood	blood
16	chr6:131615000-131624400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr6:131615000-131626200	Weak transcription	Fetal Muscle Leg	muscle
18	chr6:131615400-131616200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
19	chr6:131615600-131616000	Bivalent Enhancer	HepG2	liver
20	chr6:131615600-131616200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
21	chr6:131615600-131616400	Flanking Active TSS	H1 Cell Line	embryonic stem cell
22	chr6:131615600-131616400	Flanking Active TSS	H9 Cell Line	embryonic stem cell
23	chr6:131615600-131616400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
24	chr6:131615600-131616600	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr6:131615800-131616000	Active TSS	iPS-20b Cell Line	embryonic stem cell
26	chr6:131615800-131616200	Active TSS	iPS-18 Cell Line	embryonic stem cell
27	chr6:131615800-131616600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links