Variant report
| Variant | rs56197311 |
|---|---|
| Chromosome Location | chr3:59493363-59493364 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10510812 | 0.85[AFR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11130713 | 0.85[AFR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11130714 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11923741 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs11925209 | 0.93[AFR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11925279 | 0.93[AFR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12486826 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12487257 | 0.93[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs12489949 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs12492287 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs12492308 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12493195 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs17275189 | 0.93[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs17275950 | 0.93[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs4679487 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56963895 | 0.81[AFR][1000 genomes] |
| rs57042572 | 0.93[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs58664036 | 0.92[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs60365449 | 0.85[AFR][1000 genomes];0.97[ASN][1000 genomes] |
| rs60476036 | 0.95[ASN][1000 genomes] |
| rs73837348 | 0.93[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs73837355 | 0.93[AMR][1000 genomes];0.85[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1011181 | chr3:58665373-59542339 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 2 | nsv536574 | chr3:58665373-59542339 | Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 3 | nsv534257 | chr3:58855959-59606464 | Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| 4 | nsv998676 | chr3:59485915-59519363 | Enhancers Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:59492400-59501000 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
| 2 | chr3:59492600-59496400 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
