Variant report

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10510812	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11130713	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11130714	0.84[AFR][1000 genomes]
rs11925209	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11925279	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12486826	0.82[AFR][1000 genomes]
rs12494990	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17273249	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4679487	0.82[AFR][1000 genomes]
rs56197311	0.81[AFR][1000 genomes]
rs60365449	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60476036	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6773085	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73095774	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011181	chr3:58665373-59542339	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv536574	chr3:58665373-59542339	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv534257	chr3:58855959-59606464	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59465600-59468200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr3:59465600-59468600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr3:59465600-59468800	Enhancers	HMEC	breast
4	chr3:59466000-59468400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:59466400-59468400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:59466600-59468200	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr3:59466600-59468600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr3:59466800-59468200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:59466800-59468200	Weak transcription	HSMMtube	muscle
10	chr3:59466800-59468200	Enhancers	Osteobl	bone
11	chr3:59466800-59469000	Weak transcription	NHDF-Ad	bronchial
12	chr3:59466800-59469200	Enhancers	NHEK	skin
13	chr3:59467200-59468400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr3:59467200-59468400	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr3:59467400-59468600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr3:59467400-59468600	Enhancers	Muscle Satellite Cultured Cells	--
17	chr3:59467800-59468600	Enhancers	Placenta Amnion	Placenta Amnion
18	chr3:59467800-59468600	Enhancers	HSMM	muscle
19	chr3:59468000-59468600	Enhancers	NH-A	brain
20	chr3:59468000-59469200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search: