Variant report

Variant	rs56197885
Chromosome Location	chr9:16176541-16176542
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10962317	0.89[ASN][1000 genomes]
rs11999148	0.81[EUR][1000 genomes]
rs12004737	0.81[ASN][1000 genomes]
rs16934170	0.80[EUR][1000 genomes]
rs55654095	1.00[ASN][1000 genomes]
rs7028997	0.94[ASN][1000 genomes]
rs7029038	0.86[ASN][1000 genomes]
rs7029598	0.93[ASN][1000 genomes]
rs7044861	0.80[EUR][1000 genomes]
rs72712821	0.85[ASN][1000 genomes]
rs7868699	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv429999	chr9:16102066-16389100	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16172800-16182800	Weak transcription	Ovary	ovary
2	chr9:16175400-16176600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:16175800-16179200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:16175800-16180600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr9:16176000-16176800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links