Variant report

Variant	rs12004737
Chromosome Location	chr9:16164549-16164550
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11999673	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55654095	0.81[ASN][1000 genomes]
rs55694526	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56077305	0.92[EUR][1000 genomes]
rs56197885	0.81[ASN][1000 genomes]
rs56268371	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60287822	0.81[EUR][1000 genomes]
rs7030464	0.82[EUR][1000 genomes]
rs72712804	0.81[EUR][1000 genomes]
rs72712805	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72712806	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72712808	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72712809	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72712819	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs729119	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv429999	chr9:16102066-16389100	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv892638	chr9:16106659-16172580	Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12004737	PYGL	trans	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16157000-16171000	Weak transcription	Ovary	ovary

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links