Variant report

Variant	rs56077305
Chromosome Location	chr9:16171179-16171180
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11999673	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12004737	0.92[EUR][1000 genomes]
rs55694526	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56268371	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60287822	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7030464	0.84[EUR][1000 genomes]
rs72712804	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72712805	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72712806	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72712808	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72712809	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72712819	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs729119	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv429999	chr9:16102066-16389100	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv892638	chr9:16106659-16172580	Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16168400-16171600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:16171000-16172800	Enhancers	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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