Variant report

Variant	rs56268371
Chromosome Location	chr9:16167309-16167310
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11999673	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12004737	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55694526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56077305	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60287822	0.91[AMR][1000 genomes]
rs72712804	0.91[AMR][1000 genomes]
rs72712805	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72712806	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72712808	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72712809	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72712819	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs729119	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv429999	chr9:16102066-16389100	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv892638	chr9:16106659-16172580	Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16157000-16171000	Weak transcription	Ovary	ovary
2	chr9:16166400-16168000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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