Variant report

Variant	rs72712804
Chromosome Location	chr9:16150237-16150238
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12004737	0.81[EUR][1000 genomes]
rs55694526	0.91[AMR][1000 genomes]
rs56077305	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56268371	0.91[AMR][1000 genomes]
rs60287822	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72712803	0.88[EUR][1000 genomes]
rs72712805	0.86[EUR][1000 genomes]
rs72712806	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72712808	0.82[EUR][1000 genomes]
rs72712809	0.87[AMR][1000 genomes]
rs72712819	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv429999	chr9:16102066-16389100	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv892638	chr9:16106659-16172580	Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16145200-16150600	Weak transcription	Fetal Stomach	stomach
2	chr9:16145600-16150600	Weak transcription	Esophagus	oesophagus
3	chr9:16145600-16151000	Weak transcription	Pancreas	Pancrea
4	chr9:16145600-16152600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:16145800-16150600	Weak transcription	Ovary	ovary
6	chr9:16145800-16151000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr9:16145800-16151200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr9:16145800-16152000	Weak transcription	HSMMtube	muscle
9	chr9:16146000-16150400	Weak transcription	NHEK	skin
10	chr9:16146000-16151000	Weak transcription	Placenta	Placenta
11	chr9:16146200-16150600	Weak transcription	Fetal Muscle Leg	muscle
12	chr9:16147000-16152000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr9:16147800-16150600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:16148200-16150600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr9:16148200-16151000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr9:16148200-16151000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr9:16148200-16154600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr9:16150000-16153000	Enhancers	Colon Smooth Muscle	Colon
19	chr9:16150200-16150800	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr9:16150200-16151400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr9:16150200-16151600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr9:16150200-16151600	Enhancers	Fetal Heart	heart

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