Variant report

Variant	rs72712806
Chromosome Location	chr9:16153842-16153843
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11999673	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12004737	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55694526	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56077305	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56268371	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60287822	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72712804	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72712805	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72712808	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72712809	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72712819	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs729119	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv429999	chr9:16102066-16389100	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv892638	chr9:16106659-16172580	Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16148200-16154600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:16150800-16154400	Weak transcription	Adipose Nuclei	Adipose
3	chr9:16151000-16154000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr9:16151000-16154400	Weak transcription	Ovary	ovary
5	chr9:16151000-16155200	Enhancers	Fetal Thymus	thymus
6	chr9:16151000-16155400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:16151200-16154000	Enhancers	Fetal Muscle Trunk	muscle
8	chr9:16151400-16154600	Weak transcription	Pancreas	Pancrea
9	chr9:16151400-16154600	Enhancers	Stomach Smooth Muscle	stomach
10	chr9:16151800-16154600	Enhancers	Fetal Muscle Leg	muscle
11	chr9:16151800-16154600	Weak transcription	Dnd41	blood
12	chr9:16152000-16154200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr9:16152000-16154200	Weak transcription	Primary T cells from cord blood	blood
14	chr9:16152000-16154400	Enhancers	Fetal Brain Female	brain
15	chr9:16152200-16154600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr9:16152200-16154600	Enhancers	Brain Germinal Matrix	brain
17	chr9:16152400-16154200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr9:16152400-16154200	Enhancers	Fetal Brain Male	brain
19	chr9:16152400-16155400	Enhancers	Fetal Stomach	stomach
20	chr9:16152800-16154200	Weak transcription	NHEK	skin
21	chr9:16153400-16154200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr9:16153400-16154600	Weak transcription	Rectal Smooth Muscle	rectum
23	chr9:16153800-16154600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr9:16153800-16154600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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